Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01793 ATGGCTGCAGAGAGCACGCTGGAACTTGAATCCTCCGTGAAAAAGCAAAGAGATGAGGATGAAAAGAATAATGATGTTTCTGTTAACACTGTTTACATGGATGTTGAAGGTGGTGATGATAAGGACCCGAGTGGTAATGGTGTTTCGTCTGTGATTCCTGGGTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGAGAAGCTCACTCTTTGAAGATAGAAAAGATTTTGTTTCAAGGAAAGTCTGAATACCAGAAAGTCATGGTCTTCCAGTCATCAACATACGGTAAAGTCCTTGTTTTGGATGGAGTTATTCAGCTCACAGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTCTGCTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGTGACGGAGGAGTCCTGCGGGAAGTAGCACGTCATTCTTCAATTGAAAAGATAGACATTTGTGAAATTGACAATATGGTTGTTGAAGTCTCAAAACAATTTTTCCCTGAAGTTGCAGTAGGGTTTAACGATCCACGTGTGACACTTCGCATCGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCTGTTATAGTGGATTCATCGGACCCTATCGGTCCTGCTCAGGAGCTTTTTGAAAAGCCGTTTTTTCAGTCGGTGGCAAGGGCTCTTCGTCCAGGAGGAGTTATGTGCACTCAGGCAGAAAGTATATGGCTTCATATGGATATAATCGAGGACATTGTAGCCAATTGTCGACATATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACGGTTCCTACGTACCCAAGTGGTATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCTGTTGTCGATTTCAAGCATCCAGTGAATCCCATTGATCAAAAAGAGTGTGAAAAATCACCAAGGCCACTCAAATTCTACAACCCTGAGATTCATACAGCAGCTTTCTGTTTGCCGTTGTTTGCAAAGAGGAAGATTGGTTCCAAAGAAAATTGA 1032 0.4273 MAAESTLELESSVKKQRDEDEKNNDVSVNTVYMDVEGGDDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVANCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPVVDFKHPVNPIDQKECEKSPRPLKFYNPEIHTAAFCLPLFAKRKIGSKEN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01793 343 PIRSF Spermidine_synth 44 343 IPR030668 GO:0006595
Vifa4g01793 343 Hamap Polyamine aminopropyltransferase [speE]. 54 339 IPR001045 GO:0003824
Vifa4g01793 343 MobiDBLite consensus disorder prediction 1 47 - -
Vifa4g01793 343 PANTHER SPERMIDINE/SPERMINE SYNTHASE 46 340 IPR001045 GO:0003824
Vifa4g01793 343 FunFam Spermidine synthase 1 106 343 - -
Vifa4g01793 343 Pfam Spermidine synthase tetramerisation domain 54 108 IPR035246 -
Vifa4g01793 343 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 338 IPR029063 -
Vifa4g01793 343 Gene3D Spermidine synthase, tetramerisation domain 47 105 IPR037163 -
Vifa4g01793 343 FunFam Spermidine synthase 1 46 105 - -
Vifa4g01793 343 Pfam Spermine/spermidine synthase domain 111 298 - -
Vifa4g01793 343 CDD AdoMet_MTases 131 242 - -
Vifa4g01793 343 NCBIfam spermidine synthase 55 333 IPR001045 GO:0003824
Vifa4g01793 343 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 132 145 IPR030373 -
Vifa4g01793 343 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 290 IPR030374 -
Vifa4g01793 343 Gene3D Vaccinia Virus protein VP39 106 343 IPR029063 -
Vifa4g01793 343 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01793 Vifa-Chr4 509030844 509039785 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01793 K00797 - gmx:100776863 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01793 4 509030844 509039785 Vifa4g01793 4 509030844 509039785 ECH
Vifa1g04700 1 733801760 733804306 Vifa4g01793 4 509030844 509039785 PCT