Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04700 ATGGCGGCACCAGAAACCACACTCCCCTCCACAGATTCTCCCTTAAAGCGGCCAAGAGAAGACGAAGTAAACGGTGTCTCCGACACTCTTTCCAAAGAGCCTCAACCTAATGGTTTATCATCTGTTATCCCTGGCTGGTTCTCCGAAATCAGCCCAATGTGGCCAGGGGAGGCACACTCCTTGAAAGTGGAAAAAATTTTGTTTCAAGGAAAGTCTGATTATCAGGATGTTATGGTCTTCCAGTCAGCAACATATGGCAAAGTTCTTATTTTGGATGGAGTCATTCAGCTCACAGAAAGAGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGACGGGGGAGTCCTGAGGGAAGTTGCACGCCACTCTTCAGTTGAAAAGATAGACATTTGCGAAATAGACAAGATGGTTGTTGATGTCTCCAAAGAATTTTTCCCTGATATAGCAGTAGGTTTTGCGGATCCACGTGTGACACTTAACATTGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATCGTGGATTCATCTGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTGAGTCGGTTGCAAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCGGAAAGTATATGGCTTCATATGCACATCATTGAGGACATTGTGGTGAACTGTCGCCAGGTATTCAAAGGGTCTGTCAACTATGCTTGGACCACTGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACCGAGGGGCCTTCCGTTGATTTCAAGCATCCGGTGAATCCTATTGATGAGAATGATTGCCAGCAGGTGGCAAGACCATTGAAATTTTACAACCGTGAGATTCATTCAGCAGCTTTCTGTTTGCCATCTTTTGCCAAGAGGGCAATTGCTTCTAAAGAAAATTGA 1005 0.4488 MAAPETTLPSTDSPLKRPREDEVNGVSDTLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEFFPDIAVGFADPRVTLNIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDCQQVARPLKFYNREIHSAAFCLPSFAKRAIASKEN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04700 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Vifa1g04700 334 MobiDBLite consensus disorder prediction 1 37 - -
Vifa1g04700 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
Vifa1g04700 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Vifa1g04700 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 38 332 IPR001045 GO:0003824
Vifa1g04700 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Vifa1g04700 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Vifa1g04700 334 FunFam Spermidine synthase 1 97 334 - -
Vifa1g04700 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Vifa1g04700 334 CDD AdoMet_MTases 122 233 - -
Vifa1g04700 334 NCBIfam spermidine synthase 46 324 IPR001045 GO:0003824
Vifa1g04700 334 FunFam Spermidine synthase 1 37 96 - -
Vifa1g04700 334 PIRSF Spermidine_synth 35 334 IPR030668 GO:0006595
Vifa1g04700 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
Vifa1g04700 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 329 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04700 Vifa-Chr1 733801760 733804306 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04700 K00797 - gmx:100792107 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04700 1 733801760 733804306 Vifa1g04700 1 733801760 733804306 ECH
Vifa1g04700 1 733801760 733804306 Vifa4g01793 4 509030844 509039785 PCT