Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01364 ATGGGCTTCAAGCTCAATGTGTTGCTGTTGGTGATACTTGCAACTTCACTTATTGCTCAAGATGAAGCTTCTGTGTCTTATGATTATAAAGCTATCACCATTAATGGTCAAAGAAGAATACTACTTTCTGGTTCCGTTCATTACCCCAGAAGTACTCCTGAGATGTGGCCAGATCTTATCCAAAAGGCTAAAGAAGGAGGATTGGATGTGATTCAAACTTATGTTTTCTGGAATGGACATGAACCTTCACAAGGCAAATATTATTTTGAGGGGAACTATGATTTGGTAAAGTTCATAAAGCTAGTACAACAAGCTGGTCTCTACGTTCATCTGAGAGTTGGTCCTTATGCTTGTGCTGAATGGAACTTTGGAGGCTTCCCTGTTTGGCTCAAGTACATTCCAGGTATCAGTTTCAGAACAGACAATGGACCATTTAAGTTTCAAATGCAAAGATTTACTACTAAGATTGTGAATATAATGAAAGCTGAAAGGTTGTATGAATCACAGGGTGGTCCAATAATTCTATCTCAGATTGAAAATGAATATGGACCTATGGAGTACGTACTCGGTGCTCCTGGTAAAGCCTATACTCAGTGGGCAGCACATATGGCTGTAGGACTTAGTACCGGTGTTCCATGGGTGATGTGCAAACAAGATGATGCTCCTGATCCTATTATTAATACTTGCAATGGTTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACCGGCTTTGGAGGTCCGGTTCCTCATAGACCTGCTGAGGATTTGGCATTTTCGATTGCGAAGTTTATACAGAAAGGGGGATCATTTATCAACTACTACATGTATCACGGTGGAACAAATTTTGGAAGAACTGCTGGTGGTCCCTTTATCGCCACAAGCTATGATTATGATGCACCTCTTGATGAATACGGGCTTCTCAGGCAACCAAAGTGGGGTCATTTGAGGGATTTACACCGAGCAATAAAACTCTGCGAACCTGCTTTAGTTTCTGCAGATCCTACCGTAGTTCGTCTTGGAAACTATGAAGAGGCTCATGTTTTTAGATCAAAATCCGGAGCTTGTGCTGCGTTCCTTGCGAACTACAATCAACGATCTTATGCAACAGTGGCGTTCGGCAATCAGCATTACAACTTACCTCCTTGGTCTATCAGCATTCTTCCTAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCGCAGAGATGAAAATGAGCCGCGTTCCTATTCATGGTGGACTCTCTTGGCAAGCATTTAATGAAGAGACAACAACTACCGATGATAGTTCCTTCACTGTCACTGGTCTTTTGGAGCAGATTAACGCAACCAGAGATTTATCTGATTACTTGTGGTACTCTACAGATGTTGTGATCAATTCCAATGAAGGATTCTTTAGGAATGGAAAGGATCCTGTTCTTACAGTATTATCTGCTGGTCATGCTTTGCATGTTTTCATCAATGGTCAGCTTTCAGGAACTGCATATGGAAGTGTGGAGTTCCCCAAACTAACTTTTAGTGAGGGTGTGAAGCTTAGAGCTGGTGTTAACAAAATTTCCCTCCTAAGTGTTGCAGTTGGACTTCCGAATGTTGGTCCACATTTTGAAACATGGAATGCTGGTGTTCTCGGTCCAATTTCGTTGAATGGTCTCAATGAGGGGAGAAGGGACTTAACATGGCAGAAATGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAGTCTTCATTCTCTCAGTGGAACTTCCTCGGTTGATTGGCTTCAAGGATATTTAGTTTCTCGAAAGCAGCCATTGACTTGGTACAAAACTACTTTTGACGCTCCGCTTGGAGTTGCACCGTTGGCTTTAGACATGATAAGTATGGGAAAAGGTCAAGTCTGGTTAAACGGACAACACCTCGGTCGCTACTGGCCTGCTTATAAAGCATCCGGTTCTTGTGATTATTGCAATTACGCAGGAACTTATAATGAGAAAAAATGTGGAACCAACTGCGGCGAGGCCTCTCAACGATGGTATCATATTCCTCATTCTTGGCTGAAACCAACCGGAAATTTATTGGTTATGTTTGAGGAGTTGGGTGGGAATCCAAATGGAGTGTTTTTGGTTAGAAGGGATATAGATAGTGTTTGTGCGGATATTTACGAGTGGCAGCCAAATCTCGTTAGTTATCAGTTGCAAGCTTCTGGTAAAGTTAGCGTTCCCGTGAGTCCAAAAGCACATCTGGCATGTGGTCCGGGACAAAAAATATCGTCAATCAAATTTGCTAGCTTTGGAACTCCAGCAGGGTCTTGTGGAAACTATCGCGAAGGAGGATGTCATGCTCACAAGTCATACGATGCCTTTCAAACGAATTGTGTCGGTCAGAGTTCATGCGCCGTGACAGTGTCACCTGAAATTTTTGGAGGTGATCCATGTCCACATGTGATGAAGAAACTCTCAGTAGAGGCCATTTGCACCTGA 2517 0.4267 MGFKLNVLLLVILATSLIAQDEASVSYDYKAITINGQRRILLSGSVHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSQGKYYFEGNYDLVKFIKLVQQAGLYVHLRVGPYACAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQRFTTKIVNIMKAERLYESQGGPIILSQIENEYGPMEYVLGAPGKAYTQWAAHMAVGLSTGVPWVMCKQDDAPDPIINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTGFGGPVPHRPAEDLAFSIAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLRDLHRAIKLCEPALVSADPTVVRLGNYEEAHVFRSKSGACAAFLANYNQRSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSAEMKMSRVPIHGGLSWQAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINSNEGFFRNGKDPVLTVLSAGHALHVFINGQLSGTAYGSVEFPKLTFSEGVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPISLNGLNEGRRDLTWQKWSYKVGLKGEALSLHSLSGTSSVDWLQGYLVSRKQPLTWYKTTFDAPLGVAPLALDMISMGKGQVWLNGQHLGRYWPAYKASGSCDYCNYAGTYNEKKCGTNCGEASQRWYHIPHSWLKPTGNLLVMFEELGGNPNGVFLVRRDIDSVCADIYEWQPNLVSYQLQASGKVSVPVSPKAHLACGPGQKISSIKFASFGTPAGSCGNYREGGCHAHKSYDAFQTNCVGQSSCAVTVSPEIFGGDPCPHVMKKLSVEAICT 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01364 838 SUPERFAMILY (Trans)glycosidases 24 341 IPR017853 -
Vifa4g01364 838 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Vifa4g01364 838 FunFam Beta-galactosidase 289 417 - -
Vifa4g01364 838 ProSiteProfiles SUEL-type lectin domain profile. 752 838 IPR000922 GO:0030246
Vifa4g01364 838 FunFam Beta-galactosidase 748 838 - -
Vifa4g01364 838 Gene3D - 289 414 - -
Vifa4g01364 838 FunFam Beta-galactosidase 443 580 - -
Vifa4g01364 838 Gene3D - 602 729 - -
Vifa4g01364 838 SUPERFAMILY Galactose-binding domain-like 399 570 IPR008979 -
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 642 658 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 615 629 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 SUPERFAMILY Galactose-binding domain-like 579 745 IPR008979 -
Vifa4g01364 838 Pfam Galactose binding lectin domain 760 837 IPR000922 GO:0030246
Vifa4g01364 838 Pfam Beta-sandwich domain in beta galactosidase 344 415 IPR041392 -
Vifa4g01364 838 FunFam Beta-galactosidase 20 340 - -
Vifa4g01364 838 PANTHER BETA-GALACTOSIDASE RELATED 15 739 IPR001944 GO:0004553|GO:0005975
Vifa4g01364 838 CDD Gal_Rha_Lectin_BGal 756 837 - -
Vifa4g01364 838 Gene3D Glycosidases 16 288 - -
Vifa4g01364 838 FunFam Beta-galactosidase 588 729 - -
Vifa4g01364 838 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Vifa4g01364 838 Gene3D - 746 838 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01364 Vifa-Chr4 407006528 407011320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01364 1 837 Glycoside Hydrolase AT3G13750 78.487 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01364 - - gmx:100785688 1595.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01364 4 407006528 407011320 Vifa4g01364 4 407006528 407011320 ECH
Vifa1g04189 1 647170119 647174589 Vifa4g01364 4 407006528 407011320 PCT