Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04189 ATGCGGTTTAGCAGGGGCTTGCCAGCTAGCTCATTTCAAGAAAGCAAACAAGTGCCCGTAAGGCGTTCCTCTAGTAAGGCACCATCACCAGCGCACATGAGAAAAGGCCGTTGTTGCATAGCTCAGGTCGGAGCAACGCGCCATCGGACAGCAAGGGCAGTGATTGGCGAATCTATAGTTTCTGGTCTATATGTTCATCTCCGGATCGGTCCATACGCTTGTGCAGAATGGAATTACGGTGGCTTCCCTCTTTGGTTACATTTTATTCCGGGAATTAAGTTCAGAACTGATAATGAACCATTCAAGGCAGAAATGAAACGGTTTACAGCAAAGATTGTGGATTTGATGAAGCAAGAGAATCTCTATGCATCACAAGGAGGACCTATCATTTTATCTCAGATTGAAAATGAGTATGGAAATATTGATAAAAGCTATGGTCCTGCTGCTAAAACCTACATCAATTGGGCAGCATCGATGGCTACATCTCTTGATACAGGCGTTCCCTGGGTTATGTTCCATCAAGCAAATGCACCTGATCCAATTATTAATACGTGCAATGGATTTTACTGCGATCAATTCACGCCAAACTCTAACCAGAAACCAAAAATGTGGACTGAGAATTGGACTGGATGGTTTCTTGCATTTGGAGGTGCTGTGCCGTACAGACCTGTAGAAGATCTTGCATTCGCTGTTGCACGTTTTTTTCAGCGAGGTGGAACTTTCCAAAATTACTACATGTACCATGGAGGGACTAACTTTGGCCGAACAACTGGTGGACCTTTCATTTCTACAAGTTATGATTATGATGCACCTATTGATGAGTATGGAATTATTAGACAACCCAAATGGGGGCATCTTAAATATTTGCATAAGGCCATAAAACTTTGTGAAGAAGCACTTATAGCTACTGATCCAACAATTTCATCTCCTGGTCCAAATCTAGAGACTTCAGTTTACAAGACAGGATCTGCATGTGTGGCCTTCCTTGCTAACACCGGCACGAACGATGCAACGGTTACCTTCAACGGCAATTCATATCACTTGCCTGGATGGTCTGTGAGCATTTTACCAGATTGCAAGAGTGTCGTTCTAAATACTGCAAAGATTAATTCTGCATCTACGATTTCAAGCTTCGCAACTGAATCTGTAAAAGAAGAGGTTGATTCTTTGGGGAGTTCAAGTTCGGGATGGAGTTGGATTAGTGAACCGGTCGGTATTTCAAAGGATGATGCATTCACAAAATCTGGACTTCTTGAACAAATAAACACGACTGCAGATAGAAGTGACTACCTGTGGTATTCATTAAGCATTGATGTTGAAGATACTGCCGGTGCTCAACATGTTCTTCACATTGAATCCCTTGGTCACGCCCTTCATGCTTTTATAAATGGGAAACTTGCAGGGAGTGGAGTAGGAAACAGCGGAAACGCTAAGGTCAAGGTGGACATCCCTATTACACTTGTATCTGGAAAGAACAAAATTGATCTCCTGAGTTTAACAGTGGGACTACAGAACTATGGAGCTTTTTACGACCTAGTGGGTGCGGGGATCACTGGTCCAGTAACATTGAAAGGTTTGAGAAATGGAAGTACTGTTGATATCTCCTCACAGCAATGGACATACCAGATTGGTCTTCAAGGTGAAGATTTAGGTTTGTCTAGTGGAAGTGTTGGACAGTGGAATTCACAATCTAACTTACCTACAAATCAACCTTTGACTTGGTACAAGACGAACTTCATTGCTCCTTCTGGAAGTAACCCAGTTGCAATTGATTTCACGGGGCTGGGAAAAGGAGAAGCCTGGGTGAATGGACAGAGCATTGGACGATACTGGCCAACATACGTCGCTCCAACTTCTGGCTGTACTGACTCATGCAATTATAGAGGATCCTATTCTTCATCGAAATGTCTCAAGAACTGTGGAAAACCATCACAAATATCATTTCTCCTTTTTTAA 1956 0.4279 MRFSRGLPASSFQESKQVPVRRSSSKAPSPAHMRKGRCCIAQVGATRHRTARAVIGESIVSGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIKFRTDNEPFKAEMKRFTAKIVDLMKQENLYASQGGPIILSQIENEYGNIDKSYGPAAKTYINWAASMATSLDTGVPWVMFHQANAPDPIINTCNGFYCDQFTPNSNQKPKMWTENWTGWFLAFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFISTSYDYDAPIDEYGIIRQPKWGHLKYLHKAIKLCEEALIATDPTISSPGPNLETSVYKTGSACVAFLANTGTNDATVTFNGNSYHLPGWSVSILPDCKSVVLNTAKINSASTISSFATESVKEEVDSLGSSSSGWSWISEPVGISKDDAFTKSGLLEQINTTADRSDYLWYSLSIDVEDTAGAQHVLHIESLGHALHAFINGKLAGSGVGNSGNAKVKVDIPITLVSGKNKIDLLSLTVGLQNYGAFYDLVGAGITGPVTLKGLRNGSTVDISSQQWTYQIGLQGEDLGLSSGSVGQWNSQSNLPTNQPLTWYKTNFIAPSGSNPVAIDFTGLGKGEAWVNGQSIGRYWPTYVAPTSGCTDSCNYRGSYSSSKCLKNCGKPSQISFLLF 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04189 651 SUPERFAMILY Galactose-binding domain-like 538 614 IPR008979 -
Vifa1g04189 651 FunFam Beta-galactosidase 245 370 - -
Vifa1g04189 651 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g04189 651 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 126 138 IPR019801 GO:0004553|GO:0005975
Vifa1g04189 651 FunFam Beta-galactosidase 371 525 - -
Vifa1g04189 651 Gene3D - 533 624 - -
Vifa1g04189 651 SUPERFAMILY (Trans)glycosidases 62 297 IPR017853 -
Vifa1g04189 651 Gene3D - 368 524 - -
Vifa1g04189 651 PANTHER BETA-GALACTOSIDASE RELATED 62 646 IPR001944 GO:0004553|GO:0005975
Vifa1g04189 651 Pfam Beta-sandwich domain in beta galactosidase 300 369 IPR041392 -
Vifa1g04189 651 Pfam Glycosyl hydrolases family 35 61 292 IPR031330 -
Vifa1g04189 651 Gene3D Glycosidases 46 296 - -
Vifa1g04189 651 PRINTS Glycosyl hydrolase family 35 signature 260 276 IPR001944 GO:0004553|GO:0005975
Vifa1g04189 651 PRINTS Glycosyl hydrolase family 35 signature 67 86 IPR001944 GO:0004553|GO:0005975
Vifa1g04189 651 PRINTS Glycosyl hydrolase family 35 signature 597 613 IPR001944 GO:0004553|GO:0005975
Vifa1g04189 651 PRINTS Glycosyl hydrolase family 35 signature 203 218 IPR001944 GO:0004553|GO:0005975
Vifa1g04189 651 PRINTS Glycosyl hydrolase family 35 signature 240 255 IPR001944 GO:0004553|GO:0005975
Vifa1g04189 651 PRINTS Glycosyl hydrolase family 35 signature 124 139 IPR001944 GO:0004553|GO:0005975
Vifa1g04189 651 PRINTS Glycosyl hydrolase family 35 signature 570 584 IPR001944 GO:0004553|GO:0005975
Vifa1g04189 651 MobiDBLite consensus disorder prediction 8 24 - -
Vifa1g04189 651 SUPERFAMILY Galactose-binding domain-like 353 526 IPR008979 -
Vifa1g04189 651 FunFam Beta-galactosidase 52 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04189 Vifa-Chr1 647170119 647174589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04189 61 645 Glycoside Hydrolase AT2G28470 74.155 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04189 - - tpra:123919970 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04189 1 647170119 647174589 Vifa1g04189 1 647170119 647174589 ECH
Vifa1g04189 1 647170119 647174589 Vifa4g01364 4 407006528 407011320 PCT