Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00292 ATGGATTTGGTCTTCGCTCCAAAACCCTACACTTTGATTCTCAAACCACCTTCTTCTTTTCTCTTTCTTCCTAACAATTTCCACTCTCTCCGTCCTCTCTCTGCTTCTAAACATCTCAAGATTCAATGCGAACTTGAAGGCAAACTCAATGGTTCTCATTCTGCTGATTTTGACGCTCGCTTCCTTGATAGGCAAAAGGCACTGGAAGCAGCGATGAGTGATATAAACAACTCTTTCGGAAAAGGTAGTGTTACGAGATTGGGCAGTGCCGGTGGAGCTTTGGTTGAAACTTTTCCTAGTGGATGTTTGTCTTTAGACTTTGCTTTGGGCGGTGGTCTTCCAAAAGGAAGAATTGTAGAGATATTTGGACCAGAAAGCAGTGGGAAAACCACCTTAGCACTTCATGCTATTGCAGAAGTACAGAAGTTAGGAGGAAATGCAATGCTTGTAGATGCAGAGCACGCTTTTGATCCAGCATATTCTAAAGCATTAGGAGTGGATGTAGAAAATTTAATCGTGTGCCAACCAGATCATGGAGAGATGGCTCTTGAGATCGCAGATCGTATGTGTAGATCTGGTGCCATAGATCTCATTTGTGTTGACTCCGTCTCAGCTCTCACTCCCCGAGCAGAAGTTGAAGGTGAGATTGGAATGCAGCAAATGGGATTGCAGGCTCGTCTTATGAGCCAAGCTTTGCGTAAGATGTCTGGAAATGCATCTAAAGCTGGTTGTACGCTTATATTTTTGAACCAAATAAGATACAAGATTGGTGTCTACTATGGAAATCCCGAAGTGACAAGTGGTGGAATTGCATTGAAGTTTTTTGCATCGGTTCGGCTTGAAATTCGTTCTATAGGGAAGATAAAGTCTGCCAAAGGAGATGAAGAAGTTGGCCTTAAAGTTCGTGTTAGAGTGCAAAAGAGCAAGGTGTCAAGGCCTTACAAAGTAGCTGAATTTGATATCTCATTTGGAGAGGGAGTTAATAAGCTGGGTTGCATTTTAGATTGTGCAGAAATGATGAATATTGTCTTAAAGAAGGGTTCTTGGTACAGTTATGGGGAGCATCGGTTAGGACAGGGAAGAGACAAAACATTGCAGTACTTGAAGGAGAACCCACATCTTCTAGAAGAAGTTGAAAAGGTAGTTCGGTCTTCAATGAATGATGGAACTAACCAAACAAGCTTTTCACATGCGAAGAATAATCCACTGCTTCATCAAGATGAAGATATATATGAGGAAAGTCTATGA 1248 0.4183 MDLVFAPKPYTLILKPPSSFLFLPNNFHSLRPLSASKHLKIQCELEGKLNGSHSADFDARFLDRQKALEAAMSDINNSFGKGSVTRLGSAGGALVETFPSGCLSLDFALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEVEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSIGKIKSAKGDEEVGLKVRVRVQKSKVSRPYKVAEFDISFGEGVNKLGCILDCAEMMNIVLKKGSWYSYGEHRLGQGRDKTLQYLKENPHLLEEVEKVVRSSMNDGTNQTSFSHAKNNPLLHQDEDIYEESL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00292 415 MobiDBLite consensus disorder prediction 387 401 - -
Vifa4g00292 415 ProSiteProfiles RecA family profile 1. 94 252 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vifa4g00292 415 PRINTS RecA protein signature 268 296 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 PRINTS RecA protein signature 303 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 PRINTS RecA protein signature 357 374 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 PRINTS RecA protein signature 223 252 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 PRINTS RecA protein signature 151 180 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 PRINTS RecA protein signature 185 214 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 MobiDBLite consensus disorder prediction 387 415 - -
Vifa4g00292 415 NCBIfam recombinase RecA 63 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 SUPERFAMILY RecA protein, C-terminal domain 329 385 IPR023400 -
Vifa4g00292 415 ProSitePatterns recA signature. 271 279 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vifa4g00292 415 CDD RecA 95 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 Gene3D - 93 395 IPR027417 -
Vifa4g00292 415 Pfam recA bacterial DNA recombination protein 66 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 SMART AAA_5 115 286 IPR003593 GO:0016887
Vifa4g00292 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 327 IPR027417 -
Vifa4g00292 415 PANTHER RECA 52 397 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 FunFam Recombinase RecA 93 390 - -
Vifa4g00292 415 Hamap Protein RecA [recA]. 64 389 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa4g00292 415 ProSiteProfiles RecA family profile 2. 257 332 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00292 Vifa-Chr4 64302709 64308388 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00292 K03553 - gmx:100788534 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00292 4 64302709 64308388 Vifa4g00292 4 64302709 64308388 ECH
Vifa4g00292 4 64302709 64308388 Vifa1g08783 1 1386493615 1386499336 PCT