Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08783 ATGGCGAGGCTACTTCGAAACGCTAACACTTTTCTCTTCAACCGCTCTTTCTATAACCACGGCCTTCCGACGCGCTCTTGTTTCAAACATGGAGTAATGGGCTCATCTCAAAATTTGAGCTTTTCAACTTGTAAGAAGCGGTCTAAATCAGATGGAAGTGACTCAAATGACGAGAACATGTCTAAGAAAGATTTGGCATTACAACAAGCCATGGATCAGATCACATCTACATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTCTCACCCAAAAATGTACCTGTGGTGTCAACGGGTTCTTTTGCTCTTGATATAGCGCTAGGAATTTTTGGTCTTCCAAAGGGACGTGTTGTGGAAATATTCGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAGGCACAAAAACTAGGAGGCTATTGTGCCTTTATTGATGCTGAGCATGCACTTGATAAGTCACTTGCCGAATCTATTGGCGTAAATACCGAGAACTTGCTTCTCTCACAGCCAGATTGTGGTGAGCAGGCACTTAGCCTAGTGGATACCTTAATTCGGAGTGGTTCGCTTGATGTAATTGTCGTCGATAGCGTGGCTGCTCTTGTTCCTAAAGGCGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGGCTGATGAGCCAGGCTCTTCGGAAGCTGTGCCACTCCTTATCACTTTCACAGTGTATATTGATTTTTATAAACCAGGTAAGGTCAAAGATTTCTACGTTTGGGGGATTCGCTGGCCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAGTTCTATGCTTCCGTGAGGCTAAATATCAAAAGAATAGGGTTTATCAAGAAGGGTGAAGAGACTTTAGGAAGCCAAATTCTTGTCAAAGTTGTGAAGAACAAACACGCCCCTCCGTTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGGATATGCAAAGAAGCTGAGGTCATAGAGTTGAGCATAAAACACAAACTCATAAAAAAGAGCGGTTCGTTTTACGAATATAATGGCAAGAATTTCCATGGCAAGGAAGCTCTAAAAAACCACCTGATCAACAGCGACGGTCTGCAAGAATTAACAACAAAGCTTAGGGAAAAGCTTCTCAATGCCGAGACGGAAACAGTTTCAGAATCGGAGGTGATAGTTGGAGACATCCCGGAAGAAACTTTATCATCTGATTCTACTGATGAAGAAGCTACTGTTGTGGCAGAAGCTTGA 1275 0.4361 MARLLRNANTFLFNRSFYNHGLPTRSCFKHGVMGSSQNLSFSTCKKRSKSDGSDSNDENMSKKDLALQQAMDQITSTFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIFGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFAGPTEVTCGGNALKFYASVRLNIKRIGFIKKGEETLGSQILVKVVKNKHAPPFKTAQFELEFGKGICKEAEVIELSIKHKLIKKSGSFYEYNGKNFHGKEALKNHLINSDGLQELTTKLREKLLNAETETVSESEVIVGDIPEETLSSDSTDEEATVVAEA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08783 424 ProSiteProfiles RecA family profile 2. 261 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vifa1g08783 424 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vifa1g08783 424 CDD RecA 94 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 Hamap Protein RecA [recA]. 63 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 Pfam recA bacterial DNA recombination protein 66 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 FunFam Recombinase RecA 92 391 - -
Vifa1g08783 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 329 IPR027417 -
Vifa1g08783 424 SUPERFAMILY RecA protein, C-terminal domain 331 384 IPR023400 -
Vifa1g08783 424 SMART AAA_5 116 290 IPR003593 GO:0016887
Vifa1g08783 424 MobiDBLite consensus disorder prediction 36 61 - -
Vifa1g08783 424 Gene3D - 93 394 IPR027417 -
Vifa1g08783 424 PANTHER RECA 44 397 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 MobiDBLite consensus disorder prediction 47 61 - -
Vifa1g08783 424 NCBIfam recombinase RecA 63 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vifa1g08783 424 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08783 Vifa-Chr1 1386493615 1386499336 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08783 K03553 - gmx:100798983 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08783 1 1386493615 1386499336 Vifa1g08783 1 1386493615 1386499336 ECH
Vifa4g00292 4 64302709 64308388 Vifa1g08783 1 1386493615 1386499336 PCT