Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04610 ATGGCGTTTTCGAGATCCATCGCATTCTCTGCGTTCCTTCTTCTTCTCCTCATCAACGGTAGCTTCTGTTTCTACCTCCCCGGTGTTGCACCACAAGACTTCCAAAAGGGAGATGCATTGCAAGTGAAAGTAAACAAATTAAGTTCAACAAAGACCCAACTTCCATACACTTATTATTCACTTCCTTATTGCACCCCAAAAAAAATTGTGGACAGTGCTGAAAATCTCGGAGAAGTGCTTCGTGGTGACCGCATTGAAAATTCACGTTATGTGTTTAAAATGCGTGAACCAAAAATGTGCAATATTGTGTGTAAGCTTGTACTTGACGCCAAAACAGCAAAAGCATTCAAAGAGAAGATAGATGATGAGTATCGGGTGAACATGATTCTAGATAACCTTCCTCTGGTTGTTCCCATAAAACGCGTGGATCAGGACTCTACTGTTTATCAGCTTGGTTTCCATGTTGGACTCAAAGGGCAATATAGTGGGAGCAAGGAAGAGAAGTTTTTTATACACAACCATTTGGCATTTACTGTCAGATATCATAGAGATTTGCTCACTGAATCTGCTAGAATTGTCGGCTTTGAGGTTAAGCCATTCAGTGTCAAACATGAATATGAAGGGAAATGGGAGGAAAAAACTCGTCTAACAACCTGTGACCCTCATGCTAAACATACAGTTGTTAACTCCAATACTCCTCAAGAAGTTGAAGAGGGCAAGGAAATTTTCTTCACGTACGATGTTGAATTCCAGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGACGCCTATTTGCTGATGAGTGACGATCAAATTCACTGGTTCTCAATTGTGAACTCATTGATGATTGTTCTTTTTCTCTCGGGTATGGTGGCAATGATAATGCTGCGTACACTTTATCGCGATATTTCCAAGTACAACGAGCTTGAGACCCAAGAAGAAGCACAAGAAGAGACTGGTTGGAAGCTTGTCCATGGTGATGTTTTCAGGCCACCAAACAACTCAGATCTGCTGTGTGTTTATGTTGGTACTGGTGTTCAGTTTTTTGGGATGATACTAGTAACAATGCTCTTTGCTGTCCTTGGATTCCTTTCTCCTTCAAACAGAGGTGGGCTAATGACAGTCATGCTTTTGCTATGGGTTTTCATGGGGCTTTTGGCTGGTTATGCATCAGCCCGCTTGTACAAAATGTTCAAAGGATCAGAGTGGAAGAAAATTTCCCTCAGGACTGCAGTCATGTTCCCTGCTTCTGTCTCTGCTATCTTCTTTGTATTGAATGGTCTTATATGGGGGCAAAAATCGTCTGGAGCTGTGCCGTTTGGAACAATGTTTGCTTTGATCTTTTTATGGTTTGGAATCTCAGTTCCACTTGTTTTTGTTGGTGGCTATATTGGGTTCAGGAAACCTGCAATTGAGAATCCCGTGAAGACAAACAAAATCCCAAGGCAGATCCCTGAACAGGCGTGGTACATGAACCCGGCCTTCTCAGTTTTGATAGGAGGAATACTCCCATTTGGAGCTGTTTTCATTGAGCTTTTCTTCATCCTCACATCAATCTGTTGTGCAGTGAGGATTACTTGTGGTGGTGGCGCTCTTACCTCACATCGGGCTCTTCTGCACTGTACCTCTTTCTCTTCTTATGCCTTTTTTGTTGTAACCGGTACCATCGGATTTTATGCATGCTTTTGGTTCACAAGGCTCATTTACTCATCAGTTAAAATTGATTAG 1728 0.4225 MAFSRSIAFSAFLLLLLINGSFCFYLPGVAPQDFQKGDALQVKVNKLSSTKTQLPYTYYSLPYCTPKKIVDSAENLGEVLRGDRIENSRYVFKMREPKMCNIVCKLVLDAKTAKAFKEKIDDEYRVNMILDNLPLVVPIKRVDQDSTVYQLGFHVGLKGQYSGSKEEKFFIHNHLAFTVRYHRDLLTESARIVGFEVKPFSVKHEYEGKWEEKTRLTTCDPHAKHTVVNSNTPQEVEEGKEIFFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPNNSDLLCVYVGTGVQFFGMILVTMLFAVLGFLSPSNRGGLMTVMLLLWVFMGLLAGYASARLYKMFKGSEWKKISLRTAVMFPASVSAIFFVLNGLIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGGYIGFRKPAIENPVKTNKIPRQIPEQAWYMNPAFSVLIGGILPFGAVFIELFFILTSICCAVRITCGGGALTSHRALLHCTSFSSYAFFVVTGTIGFYACFWFTRLIYSSVKID 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04610 575 Pfam Endomembrane protein 70 55 520 IPR004240 GO:0016020
Vifa3g04610 575 SUPERFAMILY MFS general substrate transporter 274 457 IPR036259 -
Vifa3g04610 575 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 23 520 IPR004240 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04610 Vifa-Chr3 1319733080 1319737585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04610 11 575 Miscellaneous Gene Families AT5G10840 73.408 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04610 K17086 - gmx:100788693 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04610 3 1319733080 1319737585 Vifa3g04610 3 1319733080 1319737585 ECH
Vifa3g04610 3 1319733080 1319737585 Vifa2g03914 2 1141938521 1141942077 PCT