Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04559 ATGGCGGAAACTGGTTTATCGCTTATAGTTCCGAACGCGAAGAAGAAGAAGAAAACCGCGCAATTTTCTTCTTCTTCTCCTTCTCCACTTGCGATTTTTTCCAGGAAAAGTTTGTTTTATGATAGGCTTCCTTCACAGCCTTTGAGACTCTCTGTTCTCAAATTAGACGGTTCTTCGTTTGATATTCAAGTTTCGAAGAATGCGACTGTTGCGGAGCTGAAGGATTCAGTGGAAGCTGTTTTTAGTTACGTGCCTCAGATTGGTCCAGGCAAAATTTCATGGCCACATGTTTGGGGACAGTTTTGTTTATGCTATGATGAACATAAGCTAGTTAAGGAGGAGGATTATCTTAGAAATTATGGTGTCAAAGATGGTGACCAGCTCAATTTCATCCGCCATGCATCAAATAATTTCGGTGTTCAAAGAAAGCGGTCAAAGAAAAGAGTTTTCCATTTGAAACAACACAGGAGGTCACAAGTGAACTACTGCAAACAGAAAGAAAATAGCAGCAATGACGATGACGACGACAACATTGGTTCTGATGAGAATGCAGAGGTCAAGGATCACACTAAAGAAGTGCATGTTGCAAAGAACAAGATTACTGGCTTTATGGGAGATTTGTTATCCACACCACTAGCAATTGTAAGAAAAACAAAAACTCAAAACCAGATGTTCCCGTCGCCAATTTCCAGGTGTTTGCTTGGCAGTTTCAGAAAGATTAGAAGGATTGTTTGTTTTGGCAAGAGACAGCAGTACTCTATTTGGAAACGGTACTAA 777 0.4041 MAETGLSLIVPNAKKKKKTAQFSSSSPSPLAIFSRKSLFYDRLPSQPLRLSVLKLDGSSFDIQVSKNATVAELKDSVEAVFSYVPQIGPGKISWPHVWGQFCLCYDEHKLVKEEDYLRNYGVKDGDQLNFIRHASNNFGVQRKRSKKRVFHLKQHRRSQVNYCKQKENSSNDDDDDNIGSDENAEVKDHTKEVHVAKNKITGFMGDLLSTPLAIVRKTKTQNQMFPSPISRCLLGSFRKIRRIVCFGKRQQYSIWKRY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04559 258 CDD Ubl_SNRNP25 48 133 IPR040610 -
Vifa3g04559 258 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 17 245 IPR039690 GO:0000398|GO:0005689
Vifa3g04559 258 Pfam Ubiquitin-like domain 48 133 IPR040610 -
Vifa3g04559 258 MobiDBLite consensus disorder prediction 161 190 - -
Vifa3g04559 258 Gene3D - 43 142 - -
Vifa3g04559 258 SUPERFAMILY Ubiquitin-like 43 137 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04559 Vifa-Chr3 1306720680 1306723078 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04559 - - psat:127096715 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04559 3 1306720680 1306723078 Vifa3g04559 3 1306720680 1306723078 ECH
Vifa2g03987 2 1173411647 1173412276 Vifa3g04559 3 1306720680 1306723078 ECH
Vifa3g04559 3 1306720680 1306723078 Vifa2g03987 2 1173411647 1173412276 PCT