Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04554 ATGATGGATTCAATTAACCCTTTGCCTGCTGATGGACTTGATGTGGTCCACCAAAACGGTGGTGATGATGAACCTTCTAATTCTGGAGAGGACGTTGTTGTTTCAAATGGTTTAGACTCCCATGTTATTGAAACTACAGAAAACGTAGCTTTGAATGGAAAATTTGAAAATTTCGACCAGACAGAAAGCACTGCAACTGGAAACTCGGCTATGAATGAAGCTGAAGGAACAAATGACACCGTGGATGGCAATAGTTTGACTGTTTCTAAAGAAAAGGAAGTGAAGATAACAGTTCAAACGGAACAATCAAAAGCACAGAAGGGTCCTGTCAAGATTAAGAATGCAAAGGTTGCTAGCTCTAGTGGCGTTCGTGCAAGTTTGGTGAAAAACAGCAAAATTGGAAAAGACAAACCGGCATCATCTTCTGTTTCAAATGGAACTTCTGCTGTAGACTCCCGCCTAAAACAGCCTACTAAAAGCAGATCATTCAATGATCGGCAGTCTCAGTTGTCCAAGCACCCTTCAAAGTCTGATGCGACATCTTCTCAAGTTGCAGCGGAGAAGAAAAATCCCAAATCATTGAAAAAGGGTTCTCTTGATAAAGTTCAAGGAGAAACAGAACCTTCTCTTACCAATGCAGAAGATGCCAAACCTCGCAGGGTGGGGACACTTCCAAATTATGGATTCAGTTTCAGATGTGGTGAACGAGCTGAGAAAAGGAGAGAGTTCCTCAATAAGGTTGAGGAAAAGATTCAGGCAAAGGAGGAGGAGAAGAGTACATTGCAGGCAAAATCCAAGGAGAGCCAAGAAGCTGAGATAAGAAAGCTTAGGAAGAGTCTTACTTTTAAAGCAACTCCAATGCCAACTTTCTATCAGGAGCCTGCTCCTCCTAAGGTAGAGCTGAAGAAGATACCAACCACACGAGCAAAATCTCCCAAGCTCGGCCGTAAGAAGAATTCAACAAATTCAGAGTCTGATGGAAATGGAAGCATCAGTTCTCGACAAGGTCGTTTAAGTCTGCAAGAGAAAGTGCTACAGAGCAACACCACTAAAGGAATTACCTTTGTCAATCAAAAGAAGCCGATACGAAAGTCCCTTCCTACTCGACTGGCTTCTGAAAAGACCAATTCAACCGCCGCACCTACATCTAAGGCAACAAAGAAAGATACTATCTTATCCAAAGCTACAAATGAAGAGAAAACCGAGATTGTTGCAAGCAATGAAGAGAAAACCAAGATTGTTGCAGCCAATGAAGAGAAAACCGATATTGTTGCAGCCAATGAAGAGAAAACTGAGATCATTGTAGCCAATGAAGAGAACACTACTCTTTCCAGTGAGACGAATGTTGCTCTACCTCTGAATGTGGTTCCATCAGATAAGCCAAGTGAAGAAGAATATGTGAATGGTGACATAATAGTGGTTGAAGAGAATCCTCACCTTACGTTGTCACCAGAACCGATCACCACTGTGCATTGA 1476 0.4221 MMDSINPLPADGLDVVHQNGGDDEPSNSGEDVVVSNGLDSHVIETTENVALNGKFENFDQTESTATGNSAMNEAEGTNDTVDGNSLTVSKEKEVKITVQTEQSKAQKGPVKIKNAKVASSSGVRASLVKNSKIGKDKPASSSVSNGTSAVDSRLKQPTKSRSFNDRQSQLSKHPSKSDATSSQVAAEKKNPKSLKKGSLDKVQGETEPSLTNAEDAKPRRVGTLPNYGFSFRCGERAEKRREFLNKVEEKIQAKEEEKSTLQAKSKESQEAEIRKLRKSLTFKATPMPTFYQEPAPPKVELKKIPTTRAKSPKLGRKKNSTNSESDGNGSISSRQGRLSLQEKVLQSNTTKGITFVNQKKPIRKSLPTRLASEKTNSTAAPTSKATKKDTILSKATNEEKTEIVASNEEKTKIVAANEEKTDIVAANEEKTEIIVANEENTTLSSETNVALPLNVVPSDKPSEEEYVNGDIIVVEENPHLTLSPEPITTVH 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04554 491 MobiDBLite consensus disorder prediction 360 387 - -
Vifa3g04554 491 PANTHER PROTEIN WVD2-LIKE 4 87 437 IPR044833 GO:0008017
Vifa3g04554 491 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g04554 491 MobiDBLite consensus disorder prediction 55 85 - -
Vifa3g04554 491 MobiDBLite consensus disorder prediction 55 229 - -
Vifa3g04554 491 Pfam Targeting protein for Xklp2 (TPX2) domain 229 300 IPR027329 -
Vifa3g04554 491 MobiDBLite consensus disorder prediction 250 337 - -
Vifa3g04554 491 MobiDBLite consensus disorder prediction 250 279 - -
Vifa3g04554 491 Coils Coil 237 274 - -
Vifa3g04554 491 MobiDBLite consensus disorder prediction 369 387 - -
Vifa3g04554 491 MobiDBLite consensus disorder prediction 316 337 - -
Vifa3g04554 491 MobiDBLite consensus disorder prediction 135 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04554 Vifa-Chr3 1305349364 1305352962 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04554 - - gmx:100786958 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04554 3 1305349364 1305352962 Vifa3g04554 3 1305349364 1305352962 ECH
Vifa3g04554 3 1305349364 1305352962 Vifa2g04013 2 1177046909 1177050315 PCT