Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04553 ATGTCTCAAGTCTTCGGCTTTTCTGGTGATAACTTTTGCCATGGGGGTTCAATATACACAAACCCCAAGGAAGCAAGCTTCTACCTGTCTCTTGGCCCTCAGGTTGATGTCTACTATCCTCCTCAGAAGAGATCTCGTGTCAGTGTTCCATTTGTTTTCGATGGAGAATGGTTTGAGCAGAAGCAGAAAACAACAATTGATTCGTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGAAGGTTGCCTGTGGGTGAAGAAAGGAGTGCTTGCGCTTGTGTTTCCAAACGTTGGCTTATGCTTTTAAGCAGTATTTGCAAGAACGAAATCTGTAGCAACAAGAGTACCTCAGATGACAAGAATAAAATGGAAGGCGACAGTCAAGAGTTTGGAGGCGAGGGATACCTTTCCCGGAGCTTGGAAGGAAAGAAGGCCACTGATGTTAGACTTGCTGCTATTGCTGTTGGAACTGCATCACGAGGAGGATTGGGAAAGCTTTCTATCCGTGGAAACAACTCAAATCGCGGGGTTACTACTCTAGGTCTCAAAGCTGTTGCTAGCGGGTGCCCTTCTCTAAAGGTTCTTTCTCTATGGAATGTTTCCTCGGTTGGTGATGAAGGCCTAATTGAGATTGCTAATGGATGTCAACAGCTAGAGAAGCTTGACCTTTGCAGATGCCCTTCAATTTCTGACAAGGCTTTGATTGCAGTCGCGAGAAACTGTCCAAATCTAACCGAGTTATCATTGGAATCTTGTCCTAACATTCACAATGAAGGTCTACAAGCCATTGGAAAGTTCTGCTCCAATCTGAAGTCTATATCTATCAAGGATTGTGCTGGTGTTGGTGATCAGGGAATTGCTGGCCTCTTTTCTTCAACTTCTTTGCTTTTGACAAAGGTGAAGCTCCAGGCATTGACTGTTTCTGATCTCTCCCTAGCTGTAATTGGACATTATGGAAAAGCAGTTACCGATCTTGTCCTTAATTTCCTCCCAAATGTTAGTGAGAGGGGCTTCTGGGTTATGGGAAACGCTAATGGATTGCACAAACTGAAGTCACTTACAATTGCATCCTGCAGGGGAGTAACCGATGTTGGGCTTGAAGCTGTTGGAAAGGGCTGCCCTAATCTGAAAAGTGTACACCTTCAAAAGTGTGCGTTTCTCTCAGACAACGGGTTGATTTCATTCACCAAGGCTGCTATATCCCTTGAAAGCCTAAAATTGGAAGAGTGCCACAGAGTTACCCAATTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTCTTTCTCTTGTAAGCTGCTATGGAATCAAAGATCTGGACTTGGAATTGTCACCCTCATCTCCTTGTGAATCACTTCGTTCATTAGCAATCTGTAACTGCCCTGGATTTGGAAACGCTACCCTATCTGTACTCGGAAAGTTGTGCCCTCAGCTTCAACAGGTTGAATTGACTGGACTTAAGGGAGTGACAGATGCTGGTTTGCTTCCACTGCTCGAGAGCTCAGAGGCTGGTCTGGTTAAAGTCAATCTCAGTGGTTGCGTAAATCTCACAGACAAAGTAGTTTCATCCCTGGTCAATCTGCATGGTTGGACTCTCGAGATTCTAAACCTCGAAGGTTGTAAAAACATTAGCAATGCTAGCTTGATAGCAATCGCTGAGCATTGCCAATTGCTTTGTGATCTTGATGTTTCCATGTGTGCGATCTCTGATGCTGGAATAGCAGCCCTGGCACATTCAAATCAGATAAATCTACAGATTCTTTCTCTGTCAGGCTGCACTTTGGTTACGGACAGGAGTTTGCCCGCTTTGAGAAAACTGGGCCACACCCTTTTGGGACTAAACATCCAGCATTGCAATTCAATCAGCAGCAGTGCAGTTGAAATGCTTGTTGAACTTCTTTGGAGGTGTGACATCCTCTCCTGA 1932 0.4457 MSQVFGFSGDNFCHGGSIYTNPKEASFYLSLGPQVDVYYPPQKRSRVSVPFVFDGEWFEQKQKTTIDSLPDECLFEIFRRLPVGEERSACACVSKRWLMLLSSICKNEICSNKSTSDDKNKMEGDSQEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGNNSNRGVTTLGLKAVASGCPSLKVLSLWNVSSVGDEGLIEIANGCQQLEKLDLCRCPSISDKALIAVARNCPNLTELSLESCPNIHNEGLQAIGKFCSNLKSISIKDCAGVGDQGIAGLFSSTSLLLTKVKLQALTVSDLSLAVIGHYGKAVTDLVLNFLPNVSERGFWVMGNANGLHKLKSLTIASCRGVTDVGLEAVGKGCPNLKSVHLQKCAFLSDNGLISFTKAAISLESLKLEECHRVTQFGFFGVLFNCGAKLKALSLVSCYGIKDLDLELSPSSPCESLRSLAICNCPGFGNATLSVLGKLCPQLQQVELTGLKGVTDAGLLPLLESSEAGLVKVNLSGCVNLTDKVVSSLVNLHGWTLEILNLEGCKNISNASLIAIAEHCQLLCDLDVSMCAISDAGIAALAHSNQINLQILSLSGCTLVTDRSLPALRKLGHTLLGLNIQHCNSISSSAVEMLVELLWRCDILS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04553 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Vifa3g04553 643 Pfam Leucine Rich repeat 347 368 IPR001611 GO:0005515
Vifa3g04553 643 Pfam Leucine Rich repeat 558 580 IPR001611 GO:0005515
Vifa3g04553 643 Pfam Leucine Rich repeat 372 393 IPR001611 GO:0005515
Vifa3g04553 643 SMART LRR_CC_2 610 635 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 558 582 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 240 265 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 398 423 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 425 450 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 266 291 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 188 213 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 214 239 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 372 397 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 505 530 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 346 371 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 584 609 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 532 557 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 478 503 IPR006553 -
Vifa3g04553 643 SMART LRR_CC_2 452 477 IPR006553 -
Vifa3g04553 643 FunFam EIN3-binding F-box protein 1 59 108 - -
Vifa3g04553 643 SUPERFAMILY RNI-like 164 640 - -
Vifa3g04553 643 Gene3D Ribonuclease Inhibitor 447 643 IPR032675 -
Vifa3g04553 643 FunFam EIN3-binding F-box protein 1 446 643 - -
Vifa3g04553 643 SMART fbox_2 69 110 IPR001810 GO:0005515
Vifa3g04553 643 PANTHER UNCHARACTERIZED 346 528 - -
Vifa3g04553 643 FunFam EIN3-binding F-box protein 1 253 443 - -
Vifa3g04553 643 FunFam EIN3-binding F-box protein 1 134 252 - -
Vifa3g04553 643 Gene3D Ribonuclease Inhibitor 252 446 IPR032675 -
Vifa3g04553 643 Gene3D - 59 110 - -
Vifa3g04553 643 Pfam F-box domain 66 105 IPR001810 GO:0005515
Vifa3g04553 643 SUPERFAMILY F-box domain 62 103 IPR036047 GO:0005515
Vifa3g04553 643 MobiDBLite consensus disorder prediction 113 133 - -
Vifa3g04553 643 Gene3D Ribonuclease Inhibitor 143 240 IPR032675 -
Vifa3g04553 643 CDD F-box_AtTIR1-like 66 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04553 Vifa-Chr3 1305028529 1305030978 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04553 K14515 - gmx:100820247 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04553 3 1305028529 1305030978 Vifa3g04553 3 1305028529 1305030978 ECH
Vifa3g04553 3 1305028529 1305030978 Vifa2g04015 2 1177622317 1177624956 PCT