Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04015 ATGTCTAAGGTTTTTGGTTTTACTGGAAGTGATGATTTTTGTACTGGGAGGTCAGTATACCTTAATCCTAAGGAAACTGGTCTCTTCTTGTCCCTTGGCTGTCAAAAATATGCTTACAAGCCTCGTCAGAAGAGATCTCGCGTTGGTGTTCCATTTGATTTCAGTGGAGATAAGTGGTTTGAGCCGAAGCCGGAGTCATCTATTGAAACATTGCCGGATGAATGCTTGTTTGAGATCCTTAGAAGGTTGCCTGCAGGCCAAGATAGGAGTTTGTGTGCTTCGGTATCCAAGCGCTGGCTTATGCTTCTAAGCAATATTTGCAAGGATGAAATTTGCAAGGATGTTGGTAGCGGAAATGGAAACAAAGATGGTGGGGATCTAGGATTTGGTGATGAAGGGTGTCTTTCTCGACGATTGGAGGGGAAAAAGGCGTCAGATGTTAGACTAGCTGCCGTTGCTGTTGGCACAGCATCTCGAGGAGGGTTAGGAAAGCTTTCGATTAATGGGTGCAATTCAGATTCTGCGTTGACTAATGCAGGTCTTAAGGCCGTTGCTCATGGCTGCCCTTCTCTAAAGATTTTCACTCTTTGGGATGTTGATACTATTAGCGACGAAGGCTTGATTGAGATTGCTAATGGTTGTCACCAGTTAGAGAAGCTTGACCTTTGCAAGTTACAGAATATTTCTGACAAGGCTTTAATTGAAATTGCAAAGAACTGTCCTAAGCTGACCGAGTTATCGATAGAGTCATGTCCTAGTATCGGTAATGAAGGTCTACCAGCTATTGGGAAGTGGTGTCCCAATCTAAGGTCTATATCTATCAAGAACTGTCCTAGAGTTGGTGATCTGGGAATTGTTGGCATGGTATCTTCAGCATCCTTTGTTCTAACAAAGATGACACTTGAATCGCTAGCTGTTTCTGATTACTCACTAGCAGTTATTGGACAATATGGATTTGCAATTACCGATCTTGCCCTTAATTCCCTCCCATATGTCACCGGGAAGGGATTGTGGGTGATGGGTAATGGCCATGCACTGCAGAAACTAACAACGCTCACAATTGGGTCGTTCTCTGGAGTAATAGATATTGGGCTGGAAGCTCTAGGAAAGGGTTGTCCTAATGTGAAAAACTTTCAGCTTCATAAGTGTGCTTTTCTGTCGGACAATGGGCTGGTATCATTCTCCAAGGCTGCCCCATCAATTGTGAGCTTACATTTGGAAGAGTGCCATAGGGTTACCCAATTTGGGCTTTTTGGCCTCCTTTATAACTGTGGTTCAAAATTGAAGGCTCTTACTCTTGTGAGCTGCTATGGGATGAAAGATCTGAAACTGGAATTGACTGCAGTATCTCACTGTGAATCTATTTCGTCATTATCAATCCGTAACTGCCCCGGAGTTGGTAATTCTACTCTTGCCATCCTTGGAAAGCTATGTACTCGGCTTCAGCGTCTTGAGTTGATTGGACTTGAGGGAATAACAGACACAGGGTTTCTTTCTCTGCTTGAGAGGTCTAAGTCCAGTTTGGCTATTGTTAATCTAAGCCGTTGTATTAATCTGACAGATGTAGGAGTTTCGACCATGGTCAAGTTGCACAGAAAGACTCTCAAAGTGTTAAACCTCAACGGTTGTAAAAGAATCGGTGATTCTACCTTGATGGAGATTGCAGGCAACTGTCCAGCACTCAGCGATCTTGATGTTTCCAGGTGCGATATCACCGATGATGGAATTGCTGCCCTTGCCCATGCAGTCCTGCCCAATCTGGATGTACTTTCTTTGGCAGGCTGCACCTTGGTTACAAACAAGAGCATGCCTGCTTTGAAAAAATTGGGCGATTCCCTCGAGGGATTAAATATCAAAAATTGCAAGTCGATCAGCATCTGCACCGTTGACAAGCTTATTGAAAGTCTCTGGATATGTGACATCCTCTTCTGA 1932 0.4389 MSKVFGFTGSDDFCTGRSVYLNPKETGLFLSLGCQKYAYKPRQKRSRVGVPFDFSGDKWFEPKPESSIETLPDECLFEILRRLPAGQDRSLCASVSKRWLMLLSNICKDEICKDVGSGNGNKDGGDLGFGDEGCLSRRLEGKKASDVRLAAVAVGTASRGGLGKLSINGCNSDSALTNAGLKAVAHGCPSLKIFTLWDVDTISDEGLIEIANGCHQLEKLDLCKLQNISDKALIEIAKNCPKLTELSIESCPSIGNEGLPAIGKWCPNLRSISIKNCPRVGDLGIVGMVSSASFVLTKMTLESLAVSDYSLAVIGQYGFAITDLALNSLPYVTGKGLWVMGNGHALQKLTTLTIGSFSGVIDIGLEALGKGCPNVKNFQLHKCAFLSDNGLVSFSKAAPSIVSLHLEECHRVTQFGLFGLLYNCGSKLKALTLVSCYGMKDLKLELTAVSHCESISSLSIRNCPGVGNSTLAILGKLCTRLQRLELIGLEGITDTGFLSLLERSKSSLAIVNLSRCINLTDVGVSTMVKLHRKTLKVLNLNGCKRIGDSTLMEIAGNCPALSDLDVSRCDITDDGIAALAHAVLPNLDVLSLAGCTLVTNKSMPALKKLGDSLEGLNIKNCKSISICTVDKLIESLWICDILF 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04015 643 Gene3D Ribonuclease Inhibitor 446 641 IPR032675 -
Vifa2g04015 643 SMART LRR_CC_2 188 213 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 240 265 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 584 609 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 346 371 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 452 477 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 505 530 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 266 291 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 478 503 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 214 239 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 558 582 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 372 397 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 532 557 IPR006553 -
Vifa2g04015 643 SMART LRR_CC_2 398 423 IPR006553 -
Vifa2g04015 643 SMART fbox_2 71 112 IPR001810 GO:0005515
Vifa2g04015 643 FunFam EIN3-binding F-box protein 1 504 641 - -
Vifa2g04015 643 Pfam F-box domain 71 107 IPR001810 GO:0005515
Vifa2g04015 643 Gene3D Ribonuclease Inhibitor 253 445 IPR032675 -
Vifa2g04015 643 Gene3D Ribonuclease Inhibitor 136 252 IPR032675 -
Vifa2g04015 643 PANTHER UNCHARACTERIZED 319 625 - -
Vifa2g04015 643 FunFam EIN3-binding F-box protein 1 134 252 - -
Vifa2g04015 643 Pfam Leucine Rich repeat 560 580 IPR001611 GO:0005515
Vifa2g04015 643 Pfam Leucine Rich repeat 534 555 IPR001611 GO:0005515
Vifa2g04015 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Vifa2g04015 643 SUPERFAMILY RNI-like 344 639 - -
Vifa2g04015 643 Gene3D - 61 112 - -
Vifa2g04015 643 SUPERFAMILY F-box domain 57 105 IPR036047 GO:0005515
Vifa2g04015 643 SUPERFAMILY RNI-like 162 349 - -
Vifa2g04015 643 FunFam EIN3-binding F-box protein 1 253 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04015 Vifa-Chr2 1177622317 1177624956 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04015 K14515 - gmx:100805418 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04015 2 1177622317 1177624956 Vifa2g04015 2 1177622317 1177624956 ECH
Vifa3g04553 3 1305028529 1305030978 Vifa2g04015 2 1177622317 1177624956 PCT