Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04491 ATGCTGAAGCAGCTTTTCAACAAGCTTCCTCGGAAATCTTCAAAAATCGATGAAGATGAGTCGACCCGGGTTGTCGAATCCCCGCGTGCTGCTGGTAAATGCCACAATCGGCAGCAAGGCGGTGGTGCTGTGTTGAAACGAGCTTCTTCGTCGGCTGTGTTTCCAGCTAGTATGGTTTCTGGGATTGAGCCTTTGGTGCCGTTTAAGGATGTTCCGAATGGTGAGAAGATGAACTTGTTTGTGAGTAAATTGAGTCTTTGTTGTGTGACATTTGATTTTACTGACCCTGGTAAGAACATTGCTGATAAAGATGTGAAAAGGAAAACTTTGGTTGAAATTGTTGATTTTGTTGCTAGTGGATCGATGAAGTTTAGTGAACCTGTTATTCTTGCAATGTGTAGAATGTGTGCTTTTAATTTGTTTAGAGTTTTTCCGCCTAATTATAGGGTTAATGGAGTTGTTGCTAGTGGTGGTGAGAATGATGATGATGATCCAATGTTCGATCCGGCTTGGCCACATTTGCAACTTGTCTATGAATTGCTGCTTAAATTTATCTCTTCTTCGTGCCTCGATGCTAAGGTAGCGAAAAAGTATATCGATCATTCGTTCATTTCGAAGTTGCTTGAACTGTTTGATTCTGAGGATCCAAGAGAAAGAGACTGTTTGAAGACGATTCTGCATAGGGTTTATGGGAAGTTCATGGTGCATAGACCCTTTATTCGGAAAACAATTAACAATATATTCTATCGGTTTGTGATTGAGACCGAGAAACATAACGGGATTGCTGAGTTGTTGGAGATTTTTGGAAGTGTGATTTGTGGATTTGCTTTACCCTTGAAAGAGGAACACAAAATCTTCTTGTGGAGAGTGTTGATCCCCTTGCACAAGCCTAAATCTTTGGGGGTGTACTTTCAGCAACTATCCTTCTGTATTACGCAGTTCTTAGAGAAGGAGCCGAAGTTAGCGAGCATTGTTATAAGTGGTCTGTTGAAATATTGGCCGGTAACAAATAGTCAGAAAGAAGTGATGTTTCTGGGAGAATTGGAAGAAATTTTGGAAGGAATCAGCATGGTAGAGTTCCAGAGGATCATGATTCCACTGTTTTTGCGAATTTCGTGCTGCATTAATAGCCTACACTTTCAGGTAGCTGAAAGGACGCTTTTCCTGTGGAACAATGACCACATTGTAAATTTGATCGCTCATAACCGTCAAGTGATCCTGCCCATCATATTTCCGGCACTTGATAGGAATATCAAAAGCCACTGGAACCCAGCAGTTGTAAACTTAACCCATAACATCAGACAGATGTTCTTGGAGATGGACGAGAAGCTTTTCATATCTTGCCATACACAATTTAAGGAAGAAGAAGCAATTTTAATCTCAGAAGCCGAGAAGCGAAAGGAAGCATGGAAACAATTAGAGCTGGCAGCCAGTCTCAAGCCTGTAATTGGAAATACTGCTGTTTTAGTCTCTCCTTTGATGACATGA 1488 0.412 MLKQLFNKLPRKSSKIDEDESTRVVESPRAAGKCHNRQQGGGAVLKRASSSAVFPASMVSGIEPLVPFKDVPNGEKMNLFVSKLSLCCVTFDFTDPGKNIADKDVKRKTLVEIVDFVASGSMKFSEPVILAMCRMCAFNLFRVFPPNYRVNGVVASGGENDDDDPMFDPAWPHLQLVYELLLKFISSSCLDAKVAKKYIDHSFISKLLELFDSEDPRERDCLKTILHRVYGKFMVHRPFIRKTINNIFYRFVIETEKHNGIAELLEIFGSVICGFALPLKEEHKIFLWRVLIPLHKPKSLGVYFQQLSFCITQFLEKEPKLASIVISGLLKYWPVTNSQKEVMFLGELEEILEGISMVEFQRIMIPLFLRISCCINSLHFQVAERTLFLWNNDHIVNLIAHNRQVILPIIFPALDRNIKSHWNPAVVNLTHNIRQMFLEMDEKLFISCHTQFKEEEAILISEAEKRKEAWKQLELAASLKPVIGNTAVLVSPLMT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04491 495 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 72 476 - -
Vifa3g04491 495 PIRSF PP2A_B56 6 491 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa3g04491 495 SUPERFAMILY ARM repeat 78 473 IPR016024 -
Vifa3g04491 495 MobiDBLite consensus disorder prediction 1 38 - -
Vifa3g04491 495 Gene3D - 72 475 IPR011989 -
Vifa3g04491 495 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 478 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa3g04491 495 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 67 477 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa3g04491 495 MobiDBLite consensus disorder prediction 10 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04491 Vifa-Chr3 1286484541 1286486216 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04491 K11584 - gmx:100781390 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04491 3 1286484541 1286486216 Vifa2g04078 2 1193178830 1193180788 PCT