Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04078 ATGCTCAAGCAAATCCTGAGTAAACTTCCTCGGAAAACATCCAAGACCGACTCGGACGAGTCTTGCCGAGGTGACTCGTCCTGCCGGAACGATTCGCCTCGTGCCGGGAAAAGCAGCAAGTCACACGGCGGCAATGATGGTGCCAAAACCAATGCAGCGAAAAGGAATTCATCTGCGGCTGTTTTTCCGACAAGCACCGTGTCGTTGATAGAACCGTTGGTGCCGTTTAAGGATGTTGCGGGTTCTGAGAAGATGAACCTTTTTGTGAGCAAGTTGAGTCTTTGTTGTGTTGCGTTTGATTTCACCGATCCTGGTAAGAACATTGTGGAGAAAGATGTAAAAAGAAGAACTTTGATTGAACTTGTTGATTTTGTTTCTTCTTTTGGGTCTGCAAGGTTTAGTGAGCCTGCTATTCTTGCAATGTGTAGAATGTGTGCTATTAATCTCTTTCGTGTTTTCCCGCCGAATTATCGAGCCAATAATCGAGGCGGTGGTGGTGGTGAGAATGACGATGACGAACCGTCTTTTGATCCTGCTTGGCCTCATCTTCACCTTATTTATGAATTGTTGCTTAAATTTATAACATCTTCTTGCCTTGATGCTAAGGTTGCGAAAAAGTATTTCGACCATTCGTTCATTTCAAAATTGTTGGAGTTGTTTGATTCGGAGGATCCTCGAGAAAGGGATTGTTTAAAGACAATAATGCATAGGGTTTACGGCAAATTCATGGTTCATAGACCTTACATTCGGAAATCGTTTAACAATGTGTTTCATAGGTTTGTGTTTGAGACCGAGAAGCATAATGGGATTGCTGAGTTGTTGGAGATTTTTGGGAGCGTAGTAAGTGGATTTGCTTTGCCATTGAAAGAGGAACACAAGATCTTCTTGTGGAGAATTTTGATCCCTTTGCACAAGCCTAGATCTATGGGGAATTACTTCCAACAACTGTCTTACTGTGTTACACAGTTTATAGAGAAAGAGCCTAAGTTGGCAAGCATTGTGATAAGGGGTTTGTTGAAATATTGGCCAATAACACATAGTCAGAAAGAGGTGATGTTCCTTGGTGAATTGGAAGAAATTTTGGAAACAATTAACATGGTTGAGTTCCAAAGGGTCATGGTACCATTGTTTTGGCGAATTGGATGCTGCATTAGCAGTTTACATTTTCAGGTATCCGAAAGAGCCCTTTACTTATGGAACAATGACCACATCGTCAATTTGATTGCCCACAACCGTCAGGTGATACTACCTATCATAATTCCAGCACTTGAGAGAAACTGTCAGAGCCACTGGAACCCGGCAGTGCTCAACTTAACTCATAATGTTAGAAAGATGTTCATGGAGATGGATGAGAGTCTGTTCCTTTCTTGTCGTTCTCATTTTAAGGAGGAAGAAGCAATGCTAAACTTAGAATCTGAGAAACGGAAAGAAGCTTGGAAACAATTAGAACACGCAGCCAATCTCAAACTTACAATCGGAAACACTGCGGTTTTAGTGTCTTCGATTTTATAA 1512 0.4173 MLKQILSKLPRKTSKTDSDESCRGDSSCRNDSPRAGKSSKSHGGNDGAKTNAAKRNSSAAVFPTSTVSLIEPLVPFKDVAGSEKMNLFVSKLSLCCVAFDFTDPGKNIVEKDVKRRTLIELVDFVSSFGSARFSEPAILAMCRMCAINLFRVFPPNYRANNRGGGGGENDDDEPSFDPAWPHLHLIYELLLKFITSSCLDAKVAKKYFDHSFISKLLELFDSEDPRERDCLKTIMHRVYGKFMVHRPYIRKSFNNVFHRFVFETEKHNGIAELLEIFGSVVSGFALPLKEEHKIFLWRILIPLHKPRSMGNYFQQLSYCVTQFIEKEPKLASIVIRGLLKYWPITHSQKEVMFLGELEEILETINMVEFQRVMVPLFWRIGCCISSLHFQVSERALYLWNNDHIVNLIAHNRQVILPIIIPALERNCQSHWNPAVLNLTHNVRKMFMEMDESLFLSCRSHFKEEEAMLNLESEKRKEAWKQLEHAANLKLTIGNTAVLVSSIL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04078 503 MobiDBLite consensus disorder prediction 31 57 - -
Vifa2g04078 503 MobiDBLite consensus disorder prediction 10 27 - -
Vifa2g04078 503 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 80 485 - -
Vifa2g04078 503 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 487 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa2g04078 503 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 75 486 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa2g04078 503 SUPERFAMILY ARM repeat 86 482 IPR016024 -
Vifa2g04078 503 PIRSF PP2A_B56 3 500 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vifa2g04078 503 Gene3D - 81 485 IPR011989 -
Vifa2g04078 503 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04078 Vifa-Chr2 1193178830 1193180788 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04078 K11584 - gmx:100808283 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04078 2 1193178830 1193180788 Vifa2g04078 2 1193178830 1193180788 ECH
Vifa3g04491 3 1286484541 1286486216 Vifa2g04078 2 1193178830 1193180788 PCT