Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02832 ATGGCTAATAACGCAGCTGCGTGTGCTGAGAGAGCAACCAGTGACTTGCTCATTGGTCCAGATTGGGCTATCAACATTGAATTGTGTGATATCATTAACATGGATCCTAGGCAAGCAAAGGATGCATTGAAGATACTTAAGAAGCGCCTGGGCAGTAAAACCCCAAAACACAGCTGCTGGCTCTTTTTGTACTGGAGACCCTTACTAAAAATTGTGGTGAAAATAGTGAAGAAGAAGCCGGATTTAAGTGTGAGAGAAAAGATACTGATTTTAATTGATGCATGGCAAGAAGCTTTTGGAGGCCCAAGTGGAGTTTTTCCCCAATACTATGCAGCATACAACGAATTAAAGGCTGTTGGAGTTGAATTTCCACCAAGAGAAGAAAATAGTGTGCCATTCTTCACGCCTCCTCAAACTCAGCCGACTATTCATTCTGCTGCAGAATTTGATGAGGCTGCTATTCAGGCTTCTCTTCAATCAGATGCATCTGACCTTAGTGTGTTAGAGATTAAAAATGCTCAAGGGCTAGCTGATGTTTTGACGGAAATGCTCAGTGCCTTGAATCCGAAAGACCCCGAGGGCCTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAGTGCCGTTCTTACCAGAAACGGGTCATGCTTCTTGTGAGCAATACACTGGATGAGGAGCTTTTAGGTCTGGGATTAGCACTGAATGACAGCCTTCAGCGAGTACTCAGTCAACATGACAATATTGCAAAAGGAACTGCTAATTCAGGTGCAAGAGAAGTAGAAACTCCAGTTCTCCCACTTGTAAATGTAAACCATGAAGATGATGACTCAGAAGATGATTTTGGTCAATTAGCCCATAGGTCTTCACGGGATACTCATGCACAGAATCGGAAACCAGACTATGACAAGCCAGGGTCAGTGAGGACGACCTCACTTATTCCCCCACCACCAGCGTCAAAGAGGCCAGTCTACTCCGGCACTGGCATGGTTGACTATCTTAGCGGTGATGCATATAAGGCAGAAGGATCCCTTGAAAACTCAGAACCAACTTCATTTGCAGCTCCTCTTCATTCTAGCTCTAATCCTACCTCATCAACTATTCCAACAGAGTCTTCACCCCATCCTCATTCGACTACTACCTCATCACCAATTTTTAGCAAACAGCCTATATATGACGAGCCATCTCCCATGAAGTCTTCAGAACAGCTGCCTCCAGCTCCCTGGGATACACAAGCTCCTGTTGTCATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAATTTTTTGAGAAAAAAGGTTCATCTCATTCGAGCAATGGATCAAGTTCGTCTAGTGACAGCTTGGTGGGACAAACTCAAAATCTCTCTCTGAATTCACCCGCCCCAACCAAAGAACAGAAGCCAGAAGATGCACTTTTCAAAGATCTAGTTGATTTTGCAAAATCAAAAACCTCTTCATCTTCTAAACCCAATAGGTTATATTGA 1485 0.4391 MANNAAACAERATSDLLIGPDWAINIELCDIINMDPRQAKDALKILKKRLGSKTPKHSCWLFLYWRPLLKIVVKIVKKKPDLSVREKILILIDAWQEAFGGPSGVFPQYYAAYNELKAVGVEFPPREENSVPFFTPPQTQPTIHSAAEFDEAAIQASLQSDASDLSVLEIKNAQGLADVLTEMLSALNPKDPEGLKEEVIVDLVDQCRSYQKRVMLLVSNTLDEELLGLGLALNDSLQRVLSQHDNIAKGTANSGAREVETPVLPLVNVNHEDDDSEDDFGQLAHRSSRDTHAQNRKPDYDKPGSVRTTSLIPPPPASKRPVYSGTGMVDYLSGDAYKAEGSLENSEPTSFAAPLHSSSNPTSSTIPTESSPHPHSTTTSSPIFSKQPIYDEPSPMKSSEQLPPAPWDTQAPVVIPPPPSKYNQRQQFFEKKGSSHSSNGSSSSSDSLVGQTQNLSLNSPAPTKEQKPEDALFKDLVDFAKSKTSSSSKPNRLY 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02832 494 Gene3D - 158 256 IPR038425 -
Vifa2g02832 494 PANTHER TOM1-LIKE PROTEIN 1 488 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vifa2g02832 494 MobiDBLite consensus disorder prediction 340 472 - -
Vifa2g02832 494 Pfam GAT domain 176 250 IPR004152 GO:0035091|GO:0043130
Vifa2g02832 494 SUPERFAMILY GAT-like domain 128 250 - -
Vifa2g02832 494 MobiDBLite consensus disorder prediction 270 324 - -
Vifa2g02832 494 Pfam VHS domain 9 57 IPR002014 GO:0035091|GO:0043130
Vifa2g02832 494 CDD VHS 10 118 - -
Vifa2g02832 494 ProSiteProfiles VHS domain profile. 12 124 IPR002014 GO:0035091|GO:0043130
Vifa2g02832 494 Gene3D - 3 66 IPR008942 -
Vifa2g02832 494 MobiDBLite consensus disorder prediction 420 463 - -
Vifa2g02832 494 MobiDBLite consensus disorder prediction 278 303 - -
Vifa2g02832 494 SMART VHS_2 5 120 IPR002014 GO:0035091|GO:0043130
Vifa2g02832 494 MobiDBLite consensus disorder prediction 343 387 - -
Vifa2g02832 494 PIRSF TOM1 1 64 IPR014645 -
Vifa2g02832 494 PIRSF TOM1 66 494 IPR014645 -
Vifa2g02832 494 Gene3D - 67 134 IPR008942 -
Vifa2g02832 494 SUPERFAMILY ENTH/VHS domain 8 124 IPR008942 -
Vifa2g02832 494 ProSiteProfiles GAT domain profile. 160 249 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02832 Vifa-Chr2 791653368 791658626 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02832 - - gmx:100792343 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04157 3 1224802149 1224810137 Vifa2g02832 2 791653368 791658626 PCT