Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04049 ATGGATTTCAAAACCACCAAAGAATCAAAACCATTTCTCTCACTTTTCCTCTTTCTCCTGTTTTCTTCCTTTTTCCCTCTCTCTTTCTCAGCTGCCAATAAACCCCTTAACTCCGATAAGCTCCACCGCCTTGTTTCCTCCGCCGTTTTCCGTCTTCATGGAAATGTTTACCCCCTTGGGTATTATACAGTGTCTCTCAATATTGGTTATCCTCCAAAGCTTTATGATCTTGATATTGATTCGGGTAGTGACCTCACTTGGGTTCAGTGTGATGCTCCATGTAATGGTTGCACCAAGCCTCGTGAGCAACTCTATAAACCAAAAAACAACCTTGTGCAATGTGTGGACCAATTGTGTGCCGGAGTACATTTAACATCAAACTATCATTGTGATACTCCGGATGACCAGTGTGACTATGAGGTTGAGTATGCAGATCATGGATCGTCTCTCGGGGTTCTTGTTCGAGACTATATCCCTCTTCAATTCACTAATGGATCTTTGCTACGCCCTAAGATAGCCTTTGGATGTGGATATGATCAAAAGTATTCTGGTCCTACCTCTCCACCTGCTACCACAGGAGTTCTTGGCCTTGGCAATGGCAGGACAAGTATTTTGTCTCAGCTTCATTCTCTAGGTCTGATTCGCAACGTAGTTGGTCATTGCTTAAGTGGTCGAGGAGGGTTTTTATTCTTTGGAGATGATCTCATTCCCGCATCAGGAGTTCTTTGGACACCCATGTTACCTAGCTCTTCAGAAAAACACTACAGTTTAGGACCAGCAGAGCTGCTTTTCAATGGAAAGCTTACCACTGTTAAAAGTCTTGAACTTATTTTCGATAGTGGAAGCTCTTACACTTACTTCAATTCCAAAGCTTATCATGCTATTGTTGATCTGGTAAATAATGAATTAAAGGGAAAACAATTGACGAGAGCAACTGACGATCCGTCTCTTCCAATTTGTTGGAAGGGTGCAAAGTCTTTCAAATCTGTAAGTGATGTCAAAAATTATTTCAAGCCCTTAGCATTGAGATTCAAAAAAGGGAAGAATTTGCAGATGCTAATACCACCAGAAGCCTATCTCATTGTCACAAAACTTGGAAATGTTTGCTTGGGGATTCTGGATGGCACTGAAGTAGGACTTGGAGATCTGAACATAATAGGAGACATCTGTTTACAAGATAAAATGGTAATTTACGACAATGAGAGGCAGCAGATTGGATGGATTTCTTCTGATTGCGATAGGATACCCAATATCGATCGTGACTTTGAAGGTGATGCTTTTCCACACCCATATGCAGCTAATTTGGGTATCTTTGAGGACCGAGGATGTCCCGCCGCATCTGAAATGTCAAACAGATATCAGTGA 1365 0.4176 MDFKTTKESKPFLSLFLFLLFSSFFPLSFSAANKPLNSDKLHRLVSSAVFRLHGNVYPLGYYTVSLNIGYPPKLYDLDIDSGSDLTWVQCDAPCNGCTKPREQLYKPKNNLVQCVDQLCAGVHLTSNYHCDTPDDQCDYEVEYADHGSSLGVLVRDYIPLQFTNGSLLRPKIAFGCGYDQKYSGPTSPPATTGVLGLGNGRTSILSQLHSLGLIRNVVGHCLSGRGGFLFFGDDLIPASGVLWTPMLPSSSEKHYSLGPAELLFNGKLTTVKSLELIFDSGSSYTYFNSKAYHAIVDLVNNELKGKQLTRATDDPSLPICWKGAKSFKSVSDVKNYFKPLALRFKKGKNLQMLIPPEAYLIVTKLGNVCLGILDGTEVGLGDLNIIGDICLQDKMVIYDNERQQIGWISSDCDRIPNIDRDFEGDAFPHPYAANLGIFEDRGCPAASEMSNRYQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04049 454 FunFam Aspartic proteinase Asp1 isoform A 237 416 - -
Vifa3g04049 454 CDD nucellin_like 60 412 IPR033823 GO:0004190
Vifa3g04049 454 Gene3D Acid Proteases 236 419 IPR021109 -
Vifa3g04049 454 PANTHER ASPARTYL PROTEASES 37 406 IPR001461 GO:0004190|GO:0006508
Vifa3g04049 454 PRINTS Pepsin (A1) aspartic protease family signature 276 287 IPR001461 GO:0004190|GO:0006508
Vifa3g04049 454 PRINTS Pepsin (A1) aspartic protease family signature 384 399 IPR001461 GO:0004190|GO:0006508
Vifa3g04049 454 PRINTS Pepsin (A1) aspartic protease family signature 68 88 IPR001461 GO:0004190|GO:0006508
Vifa3g04049 454 FunFam Aspartyl protease family protein 38 233 - -
Vifa3g04049 454 SUPERFAMILY Acid proteases 54 417 IPR021109 -
Vifa3g04049 454 ProSiteProfiles Peptidase family A1 domain profile. 62 408 IPR033121 -
Vifa3g04049 454 Pfam Xylanase inhibitor C-terminal 272 407 IPR032799 -
Vifa3g04049 454 Pfam Xylanase inhibitor N-terminal 62 233 IPR032861 -
Vifa3g04049 454 Gene3D Acid Proteases 38 233 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04049 Vifa-Chr3 1194109200 1194111566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04049 46 416 Miscellaneous Gene Families AT1G44130 60.054 2.94e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04049 - - gmx:100790299 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04049 3 1194109200 1194111566 Vifa3g04049 3 1194109200 1194111566 ECH
Vifa3g04049 3 1194109200 1194111566 Vifa2g03271 2 936761730 936764741 PCT