Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03271 ATGAAATCAGATAAATTGGGATTCTTTGTTGTTCTACTCTTGTTGAGTTCATCTACTTGTTTAGCTTGGTTCGGTAGTAGTAAACACAAAACTTCAACTGCAAGTGAACAATCCTCATCATCGTCGTCGTCGTCACCTTCGTTCTTGAACCGTTTTCGTTCTGGCTCATCGGTCGTGTTCCCGGTTCACGGAAATGTTTACCCTGTTGGGTTTTACAATGTGACTCTCAACATTGGGCATCCACCAAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTAACATGGCTTCAATGTGACGCCCCTTGCTCCCGGTGCTCTCAGACGCCCCATCCGCTTTACCGGCCTAGCAATGACTTAGTCCCTTGCAGGCATCCCCTCTGTGCATCCGTGCATCAGACGGATAACTATGACTGTGAAGTCCAGCATCAGTGTGACTATGAAGTTGAGTATGCAGATTATTACTCATCCCTTGGTGTACTTGTCAATGATGTCTATGTTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGGACTTGGATGTGGATATGATCAGATTTTTCCAGAATCTTCCTACCACCCTGTAGATGGTATGCTTGGTCTTGGCAGGGGAAAATCTAGCTTGGTATCACAGTTGAGTAGTCAGGGTTTGGTGAGAAATGTGGTTGGACACTGTTTGAGTGCACAAGGAGGAGGATACATCTTCTTTGGAGATGTTTATGATTCGTCTCGATTGGCTTGGACTCCAATGTCATCAAATGATCACAAACATTACTCAGCAGGGCCAGCTGAACTCATTTTTGGAGGGAAGAAGACTGGGTGTGGAAATCTTTTAGCTGTTTTTGACACTGGGAGTTCTTACACTTACTTCAACTCCAACACTTATCAAGCACTAATTTCTTGGTTGACAAAAGAATTAGCTGGAAAGCCTATACAAGAAGCACCTGAAGACCAAACTCTCCCTCTATGTTGGTCTGGAAAAAGACCTTTTAGAAGTGTATATGACGTCAAAAAATACTTCAAGCCTATTGCGTTTAATTTCCCAGGCTGTAGGAGAACAAAAGCCCAATTTGAAATCCCTCCTGAAGCATACCTGATTATATCAAACTTGGGAAATGTTTGCTTGGGCATTCTAAATGGCTCTGAAGTAGGAATGGAGGATCTGAACCTAATCGGAGATATGTCCATGCTAGATAAAGTGATGGTATTTGACAATGAGAAGCAGTTGATTGGTTGGGCCCCAACAGATTGTAACCGAGTTCCAAAATCAAGAGATATCAGCATTTGA 1299 0.4296 MKSDKLGFFVVLLLLSSSTCLAWFGSSKHKTSTASEQSSSSSSSSPSFLNRFRSGSSVVFPVHGNVYPVGFYNVTLNIGHPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPLCASVHQTDNYDCEVQHQCDYEVEYADYYSSLGVLVNDVYVLNFTNGVQLKVRMGLGCGYDQIFPESSYHPVDGMLGLGRGKSSLVSQLSSQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLAWTPMSSNDHKHYSAGPAELIFGGKKTGCGNLLAVFDTGSSYTYFNSNTYQALISWLTKELAGKPIQEAPEDQTLPLCWSGKRPFRSVYDVKKYFKPIAFNFPGCRRTKAQFEIPPEAYLIISNLGNVCLGILNGSEVGMEDLNLIGDMSMLDKVMVFDNEKQLIGWAPTDCNRVPKSRDISI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03271 432 FunFam Aspartyl protease family protein 49 242 - -
Vifa2g03271 432 Pfam Xylanase inhibitor N-terminal 72 242 IPR032861 -
Vifa2g03271 432 SUPERFAMILY Acid proteases 64 424 IPR021109 -
Vifa2g03271 432 Gene3D Acid Proteases 49 241 IPR021109 -
Vifa2g03271 432 Gene3D Acid Proteases 242 425 IPR021109 -
Vifa2g03271 432 PRINTS Pepsin (A1) aspartic protease family signature 78 98 IPR001461 GO:0004190|GO:0006508
Vifa2g03271 432 PRINTS Pepsin (A1) aspartic protease family signature 283 294 IPR001461 GO:0004190|GO:0006508
Vifa2g03271 432 PRINTS Pepsin (A1) aspartic protease family signature 393 408 IPR001461 GO:0004190|GO:0006508
Vifa2g03271 432 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 283 294 IPR001969 GO:0004190|GO:0006508
Vifa2g03271 432 ProSiteProfiles Peptidase family A1 domain profile. 72 417 IPR033121 -
Vifa2g03271 432 PANTHER ASPARTYL PROTEASES 28 415 IPR001461 GO:0004190|GO:0006508
Vifa2g03271 432 Pfam Xylanase inhibitor C-terminal 283 417 IPR032799 -
Vifa2g03271 432 FunFam Aspartic proteinase Asp1 isoform A 245 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03271 Vifa-Chr2 936761730 936764741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03271 54 427 Miscellaneous Gene Families AT1G44130 52.785 8.14e-146 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03271 - - gmx:100812524 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03271 2 936761730 936764741 Vifa2g03271 2 936761730 936764741 ECH
Vifa3g04049 3 1194109200 1194111566 Vifa2g03271 2 936761730 936764741 PCT