Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03297 ATGAAGCTTCAGAGTTCATCTCTGGCTTTATTATTTCTAGGGTTTCTCTTACTATCGTCAACGCCGTCGTCCACGGCCAAATTCCTGGTGGAGAAGAACAGCTTGAGAGTGACGTCGCCGGATTCTATCAAGGGAACATACGACAGTGCGATTGGCAACTTCGGGATTCCTCAATACGGCGGTAGTATGGCTGGGAACGTTGTGTTCCCGAAGGATAATCAGAAAGGGTGTAAGGAGTTTGATGAATCCGGGATTTCGTTCAAATCGAAAGCTGGTGCTCTTCCCACCTTCGTTTTGCTCGATCGGGGAAGTTGCTTTTTTGCTTTGAAGGTGTGGAATGCCCAGAAGGCTGGAGCGTCTGCTGTTCTTGTTGCGGATGATATTGAAGAGAAACTAATAACCATGGACACTCCTGAAGAGGATGGATCATCTGCAAAATATATAGAGAACATAACAATACCTTCTGCTCTCATAGAGAAAAGTTTTGATGATCGTGTGGAGTATGAGCTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGATATGTTGATGGAATTTGTGAAAGATTTTAAGGGCGCGGCACAGATATTGGAGAAAGGTGGCTTTACTCAGTTTACACCCCATTATATAACTTGGTACTGTCCTCAGGCATTCACGTTAAGTAAGCAATGCAAGTCTCAGTGCATTAACCATGGAAGATATTGTGCTCCAGATCCCGAGCAAGATTTTAGCACTGGTTATGATGGGAAAGATGTGGTTGTTGAAAATTTGAGGCAATTATGTGTTTACAAGGTGGCAAATGAAACCCAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGGTGCCCAATGAAGGAGAAAAAATACAACAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGTCTTGATATTAAAAAGATTGAAAAGTGCATGGGAGATCCAGATGCCGATTCTGAAAATACTGTTTTGAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGATCACGAGGCGATGTTACCATATTGCCTACTCTAGTTGTCAACAGTCGTCAGTATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCAGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGAGGTGGAGACAAACGAGTGCTTGGATAACAATGGTGGTTGTTGGCGGGATAAAGGAGCTAACATAACTGCATGCAAGGATACTTTCCGCGGGCGAGTATGTGAATGTCCTTTGGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACTTGCGAAGCTAGTGGACCTGGACGGTGCAAGATAAACAATGGAGGTTGTTGGCATGATGCCCGGAATGGACACGCATTCTCTGCTTGTTCGGATAACGGAGGGATTAAATGCGAGTGTCCTGCAGGGTTTAAAGGTGATGGTGTTAAAGATTGTATAGACATTGACGAATGTAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGAAGCTATAACTGCACTTGCAGTGGGAATCTTCTGTATATCAGGGACCATGATACCTGCATAAGTAAAACTTCTAGCCAGGAAGGAAGGTCTGCTTGGGCTGCATTTTGGGTCATTGTAACCGGCTTAGTGCTGGCCGCTGCAGGGGCATACCTAGTCTACAAATATAGAATAAGGTCATATATGGATTCTGAAATAAGGGCCATCATGGCACAGTATATGCCCTTGGACAGCCAATCAGAAGTTGTAAACCATGTCAACGATGAAAGAGCATGA 1815 0.4386 MKLQSSSLALLFLGFLLLSSTPSSTAKFLVEKNSLRVTSPDSIKGTYDSAIGNFGIPQYGGSMAGNVVFPKDNQKGCKEFDESGISFKSKAGALPTFVLLDRGSCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVYKVANETQKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIEKCMGDPDADSENTVLKEEQDAQIGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSEVETNECLDNNGGCWRDKGANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHDARNGHAFSACSDNGGIKCECPAGFKGDGVKDCIDIDECKEKKACQCPECSCKNTWGSYNCTCSGNLLYIRDHDTCISKTSSQEGRSAWAAFWVIVTGLVLAAAGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQSEVVNHVNDERA 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03297 604 Gene3D Laminin 385 441 - -
Vifa3g03297 604 Gene3D - 25 176 - -
Vifa3g03297 604 FunFam vacuolar-sorting receptor 1 385 441 - -
Vifa3g03297 604 Pfam Complement Clr-like EGF-like 475 495 IPR026823 -
Vifa3g03297 604 Gene3D Laminin 497 534 - -
Vifa3g03297 604 FunFam Vacuolar-sorting receptor 1 25 187 - -
Vifa3g03297 604 CDD EGF_CA 492 520 - -
Vifa3g03297 604 SMART egfca_6 492 534 IPR001881 GO:0005509
Vifa3g03297 604 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 11 161 - -
Vifa3g03297 604 ProSitePatterns Calcium-binding EGF-like domain signature. 492 518 IPR018097 GO:0005509
Vifa3g03297 604 Gene3D Laminin 446 496 - -
Vifa3g03297 604 Pfam PA domain 65 161 IPR003137 -
Vifa3g03297 604 SUPERFAMILY PA domain 97 131 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03297 Vifa-Chr3 946816352 946822497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03297 26 604 Miscellaneous Gene Families AT2G14740 80.858 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03297 - - gmx:100803958 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03297 3 946816352 946822497 Vifa3g03297 3 946816352 946822497 ECH
Vifa1g04049 1 621853154 621856745 Vifa3g03297 3 946816352 946822497 PCT