Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04049 ATGAAGCGTTGGAGATTGTCGGCGATTCTGTTTCTAGGGTTTATGTTGACTAGCCTGTCAACGGCGAGATTCGTGGTGGAGAAGAACAGTTTGTCGGTCACTTCGCCGGAGAAAATCAAAGGCAAGCACGACAGCGCCATCGGGAACTTCGGAATACCTCAATACGGTGGTAGCATGGCCGGAAACGTTGTTTACCCTAAGGATAACAGTAAGGGTTGTAAAGACTTTGATTCATCTTTCAAATCTCGTCCTGGTGCTCTTCCCACTATCCTTTTGCTCGATCGTGGAAGTTGCTTCTTTGCTTTGAAGGTTTGGAATGCTCAGAAGGCTGGAGCTTCTGCCGTTCTTGTTGCGGATGATATTGAGGAACCTTTGATTACTATGGATACGCCGGAAGAGGATGGATCTTCTGCTAAGTATATTGAGAATATTACTATACCTTCTGCTCTTGTTGGAAAGAGTTTTGGTGAGAAGTTGAAGGATGCTATCAGTGGTGGGGATATGGTTAATGTTAATCTTGACTGGAGAGAGTCTGTTCCTCATCCTGATGATCGTGTTGAGTATGAGTTGTGGACGAATAGTAATGATGAGTGTGGAGTTAAATGTGATATGTTGATTGAATTTTTGAAGGATTTTAAGGGTGCAGCACAGATTTTAGAGAAAGGAGGTTATACTCAGTTTACGCCTCATTATATAACTTGGTACTGCCCTCATGCATTTACGTTGAGTAAGCAGTGTAAGTCTCAATGTATAAACCATGGAAGATATTGCGCTCCGGATCCTGAGCAGGACTTCAACACAGGTTATGATGGGAAAGATGTGGTTGTTGAAAATTTAAGGCAACTATGTGTTTTCAAGGTGGCAAAAGAAACAGAAAAGTCTTGGGTGTGGTGGGACTATGTTACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAGTACAATAAGGAATGTGCAAATTCTGTCATTAAATCGCTGGGTCTTGACACCGCAAAGATTGACAAGTGCATGGGAGATCCTGATGCTGATACTGAAAATTCTATTTTGAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGATCACGTGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAACAGACAATATCGAGGTAAATTGGAGAAAGGGGCCGTTCTAAAGGCTATCTGTTCCGGGTTTGAGGAAACTACTGACCCAGCTGTTTGTTTGAGCAACGATGTCGAAACAAATGAATGTTTGACAAACAACGGTGGTTGTTGGCAGGATAAAACAGCTAATATCACTGCATGCAAGGATACATTCCGTGGACGAGTATGTGAATGCCCCTTGGTTGATGGGGTTCAATTCAAAGGAGACGGTTATACAACTTGTGAAGTTAGTGGACCTGGGCGTTGCAAGATTAACAATGGAGGCTGTTGGCATGATGCCCGGAACGGCCATGCATTTTCTGCTTGTGTGGATGATGGGGGAGTTAGATGCCAGTGTCCTGCCGGGTTTAAAGGTGATGGTGTAAAAAATTGTGAAGACATTGATGAATGCCAAGATAAGAAAGCTTGCCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATAACTGCAGTTGTAGTGGAGATCTTCTGTACATCAAAGACCAGGATACATGCATCAGTAAAACTGCCAGTCAGGCAAAATCCACTTGGGCTGCTTTTTGGGTCATTTTGATTGCCTTGGCTATGATTGCTGGAGGGGGATTCCTTGTGTATAAATATAGAATTAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGAAGAAGGTCCAAATCACATCAATCATCAAAGAGGTTGA 1872 0.4295 MKRWRLSAILFLGFMLTSLSTARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNSKGCKDFDSSFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDGSSAKYIENITIPSALVGKSFGEKLKDAISGGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFNTGYDGKDVVVENLRQLCVFKVAKETEKSWVWWDYVTDFQIRCPMKEKKYNKECANSVIKSLGLDTAKIDKCMGDPDADTENSILKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSNDVETNECLTNNGGCWQDKTANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEVSGPGRCKINNGGCWHDARNGHAFSACVDDGGVRCQCPAGFKGDGVKNCEDIDECQDKKACQCPECSCKNTWGSYNCSCSGDLLYIKDQDTCISKTASQAKSTWAAFWVILIALAMIAGGGFLVYKYRIRQYMDSEIRAIMAQYMPLDSQEEGPNHINHQRG 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04049 623 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 5 612 - -
Vifa1g04049 623 Pfam PA domain 60 159 IPR003137 -
Vifa1g04049 623 Gene3D Laminin 405 461 - -
Vifa1g04049 623 CDD PA_VSR 49 173 - -
Vifa1g04049 623 SMART egfca_6 512 554 IPR001881 GO:0005509
Vifa1g04049 623 Gene3D Glutaredoxin 234 395 - -
Vifa1g04049 623 FunFam Vacuolar-sorting receptor 1 21 182 - -
Vifa1g04049 623 Gene3D Laminin 516 555 - -
Vifa1g04049 623 CDD EGF_CA 512 540 - -
Vifa1g04049 623 ProSitePatterns EGF-like domain signature 2. 496 510 IPR000742 -
Vifa1g04049 623 FunFam vacuolar-sorting receptor 1 405 461 - -
Vifa1g04049 623 Pfam Complement Clr-like EGF-like 495 515 IPR026823 -
Vifa1g04049 623 ProSitePatterns Calcium-binding EGF-like domain signature. 512 538 IPR018097 GO:0005509
Vifa1g04049 623 Gene3D Laminin 466 515 - -
Vifa1g04049 623 Gene3D - 21 182 - -
Vifa1g04049 623 SUPERFAMILY PA domain 85 169 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04049 Vifa-Chr1 621853154 621856745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04049 22 623 Miscellaneous Gene Families AT2G14740 83.636 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04049 - - tpra:123911000 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04049 1 621853154 621856745 Vifa1g04049 1 621853154 621856745 ECH
Vifa1g04049 1 621853154 621856745 Vifa3g03297 3 946816352 946822497 PCT