Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02973 ATGGGTAATTCTTTTGGTTGCTCCGCTTCCGGCGAGAGACTGGTGTCGGCGGCGAGAGACGGTGACCTTGTGGAGGCGAAGATGCTGTTGAACTGTAACCCTTGTCTTGCTAAATACTCTACTTTTGGAGGGCTTAATTCTCCTCTTCATTTTGCATCTGCAAAGGGTCATAACGAGATTGTTGCATTGTTGCTTGAGAATGGAGCTGATGTTAATTCAAAAAATTATTCTGGCCAGACGGCCTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAGACACTTCTACTCTTCAGATGCAATGTTATGAGAGGAGATTATCTCAGTGGGAGAACAGCGCTTCACTTTGCAGCAATGAACGGCCATGTAAGATGTATTAGACTTGTTGTGGCCGATTTTGTTCCAAGTGCGCCTTATGAAGCTATACATGCTCGCTCAGATGCTGACAATGGTGATGGATCAAATGTGAGAAGCATAAATGAAGAAAGTGCCCTGTCGAAGTTTGTAAATAAGACGGCTGATGGTGGTATCACTGCCCTTCATATGGCTTCGTTAAATGGTTACTTTGATTGTGTGCAACTGCTACTTGATCTTGATGCAAATATGTCTTCTGTGACATTTCATTACGGAACATCAATGGATTTAATCGGGGCTGGAAGCTCTCCTTTGCATTATGCTGCTTGTGGGGGTAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGAATGTCTTTGAATTGCAACGGGTGGCTTCCACTTGATATTGCTCGGATGTGGGGCCGCCATTGGCTTGAACTGTTGTTGGCACCCAGTTCTGATGCTCTAACACCCGTCTTCCCTCATTCAAATTACTTGTCCTTGCCTCTCATGAGTGCTATCAACATAGCAAGAGAGTATGGATTGCAATCCTCTACAACTTCTTCTGATGAGATCGACTTTTGTGCCGTATGCCTCGAGAAGCCATGTTCGGTGGCAGCAGAAGGATGTGGACATGAACTTTGTGTGAGATGTGCGCTCTATCTATGCTCGTCGATGAATGTTTCTTCTGAAACCGTTGGCCCTCCTGGCTCTATCCCTTGCCCGCTTTGTAGACACGGAATTGTCTCGTTCATCAAGTTGCCAGGTTCCCAAGCAAAAGAAGATAAATTACACGTGTCTCTTGGGCTCTGCACGACATGCATGCTACATCCACGTGACGTAGATCAGCCGTCTCTTTCTCACGCATCAGAGAACCAAAGAAACTGTGTTGACTCTGTTCCTTCAGAGTTACTCTGCCCCGTCACATGTAGTCCGTTTCCATCTATGACAATACCTACGTGCACCTGCAATGAGGGTTCATGTCCGTCATTTGAACCGCGCAACGTAGAAGCACGAGACGAACCACCTCGTCACTCACAAGCATCAACAACGGATCAAGATAAAATAGAAGGCCCGAGACTGGATAAAACAACTTGCTCAAATATGCTTTGGGGTAGAAGAAGTTACAGCAGGGAGAACCAATGCAATTCAGAAATAAATGCTTGA 1539 0.4555 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFASAKGHNEIVALLLENGADVNSKNYSGQTALMQACRYGHWEVVQTLLLFRCNVMRGDYLSGRTALHFAAMNGHVRCIRLVVADFVPSAPYEAIHARSDADNGDGSNVRSINEESALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLDANMSSVTFHYGTSMDLIGAGSSPLHYAACGGNLKCCQILLARGASRMSLNCNGWLPLDIARMWGRHWLELLLAPSSDALTPVFPHSNYLSLPLMSAINIAREYGLQSSTTSSDEIDFCAVCLEKPCSVAAEGCGHELCVRCALYLCSSMNVSSETVGPPGSIPCPLCRHGIVSFIKLPGSQAKEDKLHVSLGLCTTCMLHPRDVDQPSLSHASENQRNCVDSVPSELLCPVTCSPFPSMTIPTCTCNEGSCPSFEPRNVEARDEPPRHSQASTTDQDKIEGPRLDKTTCSNMLWGRRSYSRENQCNSEINA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02973 512 Gene3D - 142 298 IPR036770 -
Vifa3g02973 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Vifa3g02973 512 Gene3D - 4 141 IPR036770 -
Vifa3g02973 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Vifa3g02973 512 ProSiteProfiles Ankyrin repeat profile. 220 246 IPR002110 GO:0005515
Vifa3g02973 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Vifa3g02973 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Vifa3g02973 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Vifa3g02973 512 SMART ANK_2a 220 252 IPR002110 GO:0005515
Vifa3g02973 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Vifa3g02973 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Vifa3g02973 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Vifa3g02973 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vifa3g02973 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Vifa3g02973 512 Pfam Ankyrin repeats (3 copies) 214 274 IPR002110 GO:0005515
Vifa3g02973 512 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 111 303 - -
Vifa3g02973 512 MobiDBLite consensus disorder prediction 458 487 - -
Vifa3g02973 512 SUPERFAMILY RING/U-box 315 375 - -
Vifa3g02973 512 MobiDBLite consensus disorder prediction 458 485 - -
Vifa3g02973 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 205 - -
Vifa3g02973 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Vifa3g02973 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Vifa3g02973 512 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Vifa3g02973 512 Pfam Ankyrin repeat 178 206 IPR002110 GO:0005515
Vifa3g02973 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Vifa3g02973 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Vifa3g02973 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Vifa3g02973 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02973 Vifa-Chr3 836091741 836094728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02973 10 286 Miscellaneous Gene Families AT1G07710 28.421 3.09e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02973 K19044 - gmx:100785638 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02973 3 836091741 836094728 Vifa3g02973 3 836091741 836094728 ECH
Vifa1g04274 1 661447150 661450930 Vifa3g02973 3 836091741 836094728 PCT