Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04274 ATGGGAAATTCTTTTGGCTGTTCAGCTTCTGGGGAGAGATTGGTGTCTGCGGCCAGGGATGGTGATTTGGTTGAAGCAAAGATGCTTTTGGAATTCAATCCTGGTCTTGCTAAATATTCAACCTTTGGTGGTCTTAATTCACCTCTTCATTTTGCTGCTTCCAAGGGTCATAACGAGATTGTGGCATTGTTGCTTGAGAAGGGAGCTGATGTGAATTCGAGAAATTATTGTGGGCAGACAGCTTTGATGCAAGCTTGTAGACATGGTCATTGGGAAGTTGTGCAGACCCTTATGCTCTACCGATGCAATGTTATGAAAGCAGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTCAGTGGGCATGTTAGATGCATTAGACTTGTTGTGGCTGACTTCGTTCCAAGTGCTCCTTATGAAACTCCACATGCTAGCACGGATGCTGACGTGAGTGATGGATCAAATACGAAAAGAAAAAACGAGCAAAGTACATTGTCCAAGTTTGTAAACAAGACGGCTGATGCTGGTATTACTGCACTTCACATGGCTGCATTGAACGGCTATTTCGATTGTGTACAACTCCTACTTGATCTTAACGCAAATGTGTCAGCTGCAACATATCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGTGGAAACTTAAAATGCTGCCAGATCCTCCTTGCAAAAGGTGCAACTCGAATGGCTTTGAACTGCAACGGGTGGCTTCCGCTTGATGTTGCTAGGATGTGGGGGCGTCATTGGCTCGAACCGTTGCTGGCGCCCAGTTCTGATACCGTAGTGTCGTCATTCCCTACTTCAAATTATTTATCTTTGCCCCTCATGAGCGTGCTCAACATAGCCAGAGAATGTGGATTGCAACCACCGACAACCTCCTCTAATGAGATCGACTTCTGTGCTGTCTGCCTCGAGAAGCCATGTTCAGTAGCTGCAGAAGGATGCATGCACGAGCTTTGCGTAAGATGTGCGCTCTATCTTTGCTCCACAACCAATGTTTCTTCTGAAATGCAAGGCCCTCCCGGTTCCATCCCTTGTCCTCTTTGTCGACATGGAATTATCTCTTTTGTCAAGTTACCGAGTTTCCAACCGAAAGAAAACAAATTACACGTCTCGCTCAGCATGTGTACTCCCTGCATGCAGCATCCACGTGACGTAGATCAAACCTCTCTCTCACATACTACACCTGAAATTCGAAGAAACCGAGTAGCTTCCGTTTCTTCGGAGATGCTTTGTCCTGTCACCTGTACACCGTTTCCTTCCGTAGCAATTCCGTTATGTACCTGCAATGATGGTCCTTGCCCACCATTTGAACCCCGGGAAGATGAAACTCAAGATGAATCTCCCCGTCACTCACAAGCTTCGACAACTGATCAAGATAAAATGGAAGGACCAAAACTGGTGAAAACTACGTGTTCGAATATGTTTTGGGGTAGAAGAAGTTGCAGCAGAGAGAATCAATGTAATTCAGAAATAAATGCTTGA 1542 0.454 MGNSFGCSASGERLVSAARDGDLVEAKMLLEFNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLEKGADVNSRNYCGQTALMQACRHGHWEVVQTLMLYRCNVMKADYLSGRTALHFAAVSGHVRCIRLVVADFVPSAPYETPHASTDADVSDGSNTKRKNEQSTLSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANVSAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLAKGATRMALNCNGWLPLDVARMWGRHWLEPLLAPSSDTVVSSFPTSNYLSLPLMSVLNIARECGLQPPTTSSNEIDFCAVCLEKPCSVAAEGCMHELCVRCALYLCSTTNVSSEMQGPPGSIPCPLCRHGIISFVKLPSFQPKENKLHVSLSMCTPCMQHPRDVDQTSLSHTTPEIRRNRVASVSSEMLCPVTCTPFPSVAIPLCTCNDGPCPPFEPREDETQDESPRHSQASTTDQDKMEGPKLVKTTCSNMFWGRRSCSRENQCNSEINA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04274 513 MobiDBLite consensus disorder prediction 143 165 - -
Vifa1g04274 513 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Vifa1g04274 513 ProSiteProfiles Ankyrin repeat region circular profile. 220 245 - -
Vifa1g04274 513 Pfam Ankyrin repeats (many copies) 112 198 IPR002110 GO:0005515
Vifa1g04274 513 Pfam Ankyrin repeats (many copies) 46 97 IPR002110 GO:0005515
Vifa1g04274 513 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Vifa1g04274 513 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Vifa1g04274 513 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Vifa1g04274 513 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Vifa1g04274 513 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Vifa1g04274 513 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Vifa1g04274 513 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Vifa1g04274 513 MobiDBLite consensus disorder prediction 149 165 - -
Vifa1g04274 513 MobiDBLite consensus disorder prediction 457 484 - -
Vifa1g04274 513 Gene3D - 6 139 IPR036770 -
Vifa1g04274 513 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Vifa1g04274 513 SUPERFAMILY RING/U-box 318 375 - -
Vifa1g04274 513 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Vifa1g04274 513 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 111 390 - -
Vifa1g04274 513 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Vifa1g04274 513 Gene3D - 141 281 IPR036770 -
Vifa1g04274 513 SMART ANK_2a 177 206 IPR002110 GO:0005515
Vifa1g04274 513 SMART ANK_2a 111 141 IPR002110 GO:0005515
Vifa1g04274 513 SMART ANK_2a 77 106 IPR002110 GO:0005515
Vifa1g04274 513 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vifa1g04274 513 SMART ANK_2a 220 252 IPR002110 GO:0005515
Vifa1g04274 513 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Vifa1g04274 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 384 IPR013083 -
Vifa1g04274 513 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Vifa1g04274 513 Pfam Ankyrin repeats (3 copies) 215 266 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04274 Vifa-Chr1 661447150 661450930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04274 14 276 Miscellaneous Gene Families AT2G31820 28.195 2.80e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04274 K19044 - gmx:100812809 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04274 1 661447150 661450930 Vifa1g04274 1 661447150 661450930 ECH
Vifa1g04274 1 661447150 661450930 Vifa3g02973 3 836091741 836094728 PCT