Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02886 ATGGACGCTCACACTCCTCTCCTCAACGGCGCCGCTTCTTCGTCTCCGCCGTTGTTGGAGGAAGACGGCGATTACACGGAAGTGAAAGGCTTTAAACAAGCCAGAAAGGTTTTCGCGATTGAAACGGCGAAAATATGGAGAATTGCGTTGCCTATAGTTTTCAACATTTTGTGCCAATACGGTGTTAACTCTATTACGAATATCTTCGTTGGTCATCTCGGTGATATTGAACTCTCTGCTATTTCTCTCATTAACTCTGTCATTGGCACTTTCGCTTTTGGCTTCATGTTAGGAATGGGGAGCGCGACGGAGACGCTCTGCGGTCAAGCTTTTGGAGCTGGACAGATTCAATTGCTTGGTGTTTATATGCAACGGTCGTGGATAATTCTATTTGTGACGAGTTTATTACTCTTGCCGATATACATTTTTGCTGCTCCGATTTTGAAACTTCTTGGCCAACAGAAAGATATGGCTGATCTTGCTGGAAATTTTGCACTTTTAGTGATTCCGCAATTCCTCTCACTTTCCTTCAATTTTCCAACACAAAAGTTTCTTCAGTCTCAGAGTAAGGTTAATGTGATTGCGTGGATTGGGTTGGTGGCTCTGATTTTGCATATTGGCTTGCTCTGGCTCTTGATTTATGTGTTAGAGTTAGGCTTAACTGGTGCAGCGATTGCATTTGATGTCACAAGTTGGGGAATTACTTTGGCTCAACTTGTTTATGTGGTTGGTTGGTGTAAGGATGGATGGAATGGGTTGTCGTGGTTGGCTTTTAACGATATATGGTCCTTTGTTAGGCTATCGATTGCATCGGCTGTTATGCTTTGCCTTGAAGTTTGGTATATGATGAGTCTTATTGTTCTTGCTGGTCACCTTGATAATGCAGTGATTGCTGTCGATTCCATCTCTATATGCATGAATTACAATGGATGGGAAGGCATGATCTTCATTGGCATAAATGCAGCTATAAGTGTCCGAGTTTCCAATGAACTTGGTCTTCGACATCCAAGAGCTGCCAAATACTCTGTCTATGTGACAGTCATTCAATCTCTTTTCATGGGAATATTCTTCATGGGTGTTATTTTGCTAACCAAGGACTATTTTGCCATCATTTTTACCAATAGCGAGACTTTGCAAGTGGCGGTTGCAAAACTAGGAGGCCTCCTTGCCGTGACAATGGTTCTAAACAGCGTTCAACCAGTGATTTCGGGTGTTGCTGTTGGAGGTGGATGGCAGGCCTTGGTGGCTTACATCAACATAGGTTGTTATTACTTGTTTGGGCTTCCATTAGGGTACCTTCTTGGTTATGTTGCAGAATTGGGGGTTAAGGGACTTTGGGGAGGTATGATATGTGGAATTCTCCTCCAGACCTTGCTGCTATTGGGGATACTTTACAAAACCAATTGGAACAAAGAGGTCGATGACACATCTGCACGCGTGCAGCAGTGGGGTGGACAATCCGCTGAAGTTGACAAGACACCGGCTTCTGCATAA 1494 0.4378 MDAHTPLLNGAASSSPPLLEEDGDYTEVKGFKQARKVFAIETAKIWRIALPIVFNILCQYGVNSITNIFVGHLGDIELSAISLINSVIGTFAFGFMLGMGSATETLCGQAFGAGQIQLLGVYMQRSWIILFVTSLLLLPIYIFAAPILKLLGQQKDMADLAGNFALLVIPQFLSLSFNFPTQKFLQSQSKVNVIAWIGLVALILHIGLLWLLIYVLELGLTGAAIAFDVTSWGITLAQLVYVVGWCKDGWNGLSWLAFNDIWSFVRLSIASAVMLCLEVWYMMSLIVLAGHLDNAVIAVDSISICMNYNGWEGMIFIGINAAISVRVSNELGLRHPRAAKYSVYVTVIQSLFMGIFFMGVILLTKDYFAIIFTNSETLQVAVAKLGGLLAVTMVLNSVQPVISGVAVGGGWQALVAYINIGCYYLFGLPLGYLLGYVAELGVKGLWGGMICGILLQTLLLLGILYKTNWNKEVDDTSARVQQWGGQSAEVDKTPASA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02886 497 PANTHER MULTIDRUG RESISTANCE PROTEIN 34 469 - -
Vifa3g02886 497 NCBIfam MATE family efflux transporter 51 446 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa3g02886 497 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g02886 497 CDD MATE_eukaryotic 41 473 IPR045069 GO:0042910|GO:1990961
Vifa3g02886 497 Pfam MatE 51 210 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa3g02886 497 Pfam MatE 271 433 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02886 Vifa-Chr3 811186634 811189432 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02886 K03327 - gmx:100799559 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02886 3 811186634 811189432 Vifa3g02886 3 811186634 811189432 ECH
Vifa1g04483 1 697098993 697101160 Vifa3g02886 3 811186634 811189432 PCT