Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04483 ATGGAAACACCTTTGATACTCAAAAGCTTAACTTCAGAAAATGATTATTTGGCAGTGAAAAGCTTGAAGGATTTGAAACATGTTATGTGGAGTGAAACATTGAAGATATGGAAGATAGCAATACCAGTGGCTTTGTCTTTACTTTTTCAGTTTCTCAATAACTCTTCAACTTCCATCTATGCTGGTCATCTTGGAGACATTGAACTCTCTTCATTCTCTATTTATCAAACTGTCATCGGTTCTATCTACTTCTCTTTGCTGTATGGCATGTCAAATGCAATAACAACACTATGTGGCCAAGCTTATGGTGCTGGACAGTTTCAAAATGCTGGTATTTACCTTCAAAGGTCATGGATTATACTCATAATCACTTGCATACTTTTGATACCAGTTCATATATTTGCAACTCCAATCTTAAAACTTCTTGGCCAAGAAAAAGAAATTGCTGATTTAGCTGGAAAATATACAATTCTAGTAATTCCATATATGTTTTCCTATGCTATTAATTTACCCCTCATGAAATATCTTCAATCACAAAGCAGAGTTAATGTTATTATGTACATAGCAATTGTTACATTGCTAACACAAAATGCTTTACTTTATACCTTCATCAAAGTGTTTGATTGGGGAATAATTGGTTTGGCAATGGCAAGTAATATCTCAGGATGGGTATTTTCTGGTGCATTAGTAGTTTATACCATTGGTTGGTGTAAAGATGGATGGAATGGATTCTCTTGGATGGCTTTTAGGGAATTGTGGGAATTTATTAAACTAAGTATTGGTTCATGTGTAATGATCTGCTTAGAACAATGGTATTCTGCTTGCATTATGCTACTTGCTGGTCATCTTCATAATCCTGTCATTGATGTTGGTTCCTTTTCAATTTGCCTTAATATTCAGGGTTGGCACACCATGTTGCTTCTTGGAGTAAGTACAGCAGTAAGTGTTCGTGTGTCGAATACACTTGGAATGTCACATCCAAGAGCAGCCAAATACTCTTTCTTGGTGACAATGTTTCAATCTCTTCTCCTTGGAATCATTTTCATGACTGTGATTTTCTTGAGTAAAGACAAATTTGCATTGATCTTTACCAAGAGTGAGGATATGATACATGCTGCTAGTGAATTAGCATACTTTCTTGGTATAAGCATGATTCTCAACACTGCTTCGCAAATTATTTCAGGTGTGGTAATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTAGCATGTTATTACATTGTTGGACTCCCTATTGGAATTTTTCTTGGTTTCCACCAGCATTTAGGAATCAAGGGTCTATGGGGAGGCACAGCGTGTGGCATTATTCTTCAGACTTCAGTCCTCATACTCATTATTTATAGGACAAACTGGACCAAGGAGGTAGAGCAAGCAGCAAATCGAATGCAAATCTGGAGCTCTAACAAAGAACAACGAAGTGATTGA 1452 0.3643 METPLILKSLTSENDYLAVKSLKDLKHVMWSETLKIWKIAIPVALSLLFQFLNNSSTSIYAGHLGDIELSSFSIYQTVIGSIYFSLLYGMSNAITTLCGQAYGAGQFQNAGIYLQRSWIILIITCILLIPVHIFATPILKLLGQEKEIADLAGKYTILVIPYMFSYAINLPLMKYLQSQSRVNVIMYIAIVTLLTQNALLYTFIKVFDWGIIGLAMASNISGWVFSGALVVYTIGWCKDGWNGFSWMAFRELWEFIKLSIGSCVMICLEQWYSACIMLLAGHLHNPVIDVGSFSICLNIQGWHTMLLLGVSTAVSVRVSNTLGMSHPRAAKYSFLVTMFQSLLLGIIFMTVIFLSKDKFALIFTKSEDMIHAASELAYFLGISMILNTASQIISGVVIGCGWQVMVGYINLACYYIVGLPIGIFLGFHQHLGIKGLWGGTACGIILQTSVLILIIYRTNWTKEVEQAANRMQIWSSNKEQRSD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04483 483 NCBIfam MATE family efflux transporter 42 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g04483 483 Pfam MatE 42 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g04483 483 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g04483 483 CDD MATE_eukaryotic 32 466 IPR045069 GO:0042910|GO:1990961
Vifa1g04483 483 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04483 Vifa-Chr1 697098993 697101160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04483 K03327 - gmx:100789611 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04483 1 697098993 697101160 Vifa1g04483 1 697098993 697101160 ECH
Vifa1g04483 1 697098993 697101160 Vifa3g02886 3 811186634 811189432 PCT