Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02772 ATGACTGAACCTTCCAAAGTCATTCATGTTCGAAACGTCGGGCACGAAATATCTGAAAATGATTTACTTCAGCTATTTCAACCTTTTGGAGTCATTACAAAGCTTGTGATGCTGCGTGCAAAAAATCAGGCACTCATCCAAATGCAAGACGTTCCTTCTGCAATAAGTTCTTTACAATTTTATGCAAATACTCAACCTAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCCTCTCATCAAGAGCTAACAACAGTAGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACGTGCTCTATCCCATAACAGTGGATGTACTGTATCAAGTTTTTTCTCCTCATGGATCTGTGGAAAAGATTGTGACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATTCAGTACCAATCACAACAGAGTGCTATTACTGCGAGAACTGCACTTCAGGGTCGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGATCAAGAGACTTCACAAACCCTAGTCTGCCAACAGAACAGAAAGGAAGACCTTCACAACCTGGATATGGTGATGCAGGAAACATGTATGGTGTTCAAGGTTCTGGAGCCAGAGCAGTTGGATATCCGCAGATGCCCAATGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCAGGAATAACCGGGACAAACGATAGGTGTACACTTCTTGTTTCAAATCTTAATCCCGAGAGAATTGACGAGGATAAACTGTTCAACTTGTTCTCCCTTTACGGGAATATCGTGAGAATTAAACTTCTACGCAATAAACCAGATCACGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTGGCAGTACACTTTCTGAAGGGAGCCCTGTTGTTTGATAAGCGACTTGAGGTGAACTTCTCAAAGCATCCAAACATAACCCAAGGTGCTGACACGCATGATTACAGCAACTCGAATCTCAACCGTTTCAACCGTAACGCTGCTAAAAATTACCGTTATTGCTGCTCCCCAACAAAGATGATCCATTTGTCTACACTTCCACAAGACATCACTGAGGAGGAGATTGTGACCCTTCTAGAGGAGCATGGGACCATTGTCAATAGCAAAGTCTTTGAGATGAATGGTAAGAAACAAGGTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCGCTCGTGTGCAAGCATGCCACCTCACTTTCCGGCTCAATAATCCGGATCTCTTATTCTCAGTTGCAGAATATATGA 1332 0.4332 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAISSLQFYANTQPSIRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSAITARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPSLPTEQKGRPSQPGYGDAGNMYGVQGSGARAVGYPQMPNAAAIAAAFGGGLPPGITGTNDRCTLLVSNLNPERIDEDKLFNLFSLYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGALLFDKRLEVNFSKHPNITQGADTHDYSNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEEQATEALVCKHATSLSGSIIRISYSQLQNI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02772 443 CDD RRM3_PTBPH3 255 330 IPR034797 -
Vifa3g02772 443 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Vifa3g02772 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Vifa3g02772 443 MobiDBLite consensus disorder prediction 186 202 - -
Vifa3g02772 443 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 421 - -
Vifa3g02772 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 431 IPR000504 GO:0003723
Vifa3g02772 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Vifa3g02772 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 339 - -
Vifa3g02772 443 CDD RRM1_PTBPH3 6 80 IPR034795 -
Vifa3g02772 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Vifa3g02772 443 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Vifa3g02772 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vifa3g02772 443 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 4 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Vifa3g02772 443 Pfam RRM-like domain 95 174 IPR021790 -
Vifa3g02772 443 Gene3D - 253 349 IPR012677 -
Vifa3g02772 443 Gene3D - 350 443 IPR012677 -
Vifa3g02772 443 Gene3D - 1 95 IPR012677 -
Vifa3g02772 443 SMART rrm1_1 101 170 IPR000504 GO:0003723
Vifa3g02772 443 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vifa3g02772 443 SMART rrm1_1 257 326 IPR000504 GO:0003723
Vifa3g02772 443 SMART rrm1_1 367 436 IPR000504 GO:0003723
Vifa3g02772 443 MobiDBLite consensus disorder prediction 186 214 - -
Vifa3g02772 443 Gene3D - 96 201 IPR012677 -
Vifa3g02772 443 CDD RRM4_PTBPH3 359 437 - -
Vifa3g02772 443 SUPERFAMILY RNA-binding domain, RBD 254 439 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02772 Vifa-Chr3 768898013 768901802 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02772 K14948 - gmx:100819672 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04698 1 733155325 733161050 Vifa3g02772 3 768898013 768901802 PCT