Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04698 ATGGCTGAACCCTCCAAGGTCATTCATGTTCGAAATGTTGGTCATGAGATATCTGAAAATGATTTGCTTCAACTATTTCAACCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCTAAAAATCAGGCTCTTCTCCAAATGCAAGAAATTCCTTCTGCAGTTAGTGCTATACAGTTCTATGAAAATGCTCAACCAAACATAAGGGGGAGAAATGTTTATGTTCAGTTTTCCTCTCATCAAGAACTGACGACAATGGATCAAAATCAAGGACGAGAAGACGAGCCAAATCGAATTCTCTTAGTCACGGTTCATCAAATGCTCTATCCTATAACAGTGGATGTGCTACAACAAGTATTCTCTCCCCATGGATATGTGGAAAAGGTTGTAACATTTCAGAAGTCAGCTGGCTTTCAAGCTCTCATCCAGTATGAAACTCGTCAAAGTGCCATAACTGCCAGAACTGCACTTCAGGGACGCAATATTTATGACGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAGGGACTTTACAAACCCAAATCTGCCTACAGAGCAGAAAGGCCGACCTTCACAATCTGGATATGGCGATGCAGGAATGTATGGGGTTCAAGGTCCTGGACCCAGATCAGCTGGATTCTCGCAGATGGGCAATGCTGCAGCTGTTGCCGCTGCTTTCGGGGGAGATTTTCCTCCTGGAATAACTGGAACAAATGACAGGTGTACAATTCTCGTCACTAATCTCAATCCTGATAGAATCGACGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATCAAAATTCTCCGGAATAAACCAGATCATGCACTTGTTCAGATGGGGGATGGTTTCCAAGCCGAATTGGCAGTGTATTTTCTGAAGGGAACCATGCTATTTGGAAAGCGAATGGAGGTGAACTTCTCAAAGCATCCAAACATAACCCAAGGTGCTGATACACACGAATACATAAGCTCAAATCTCAACCGATTCAACCGAAATGCTGCTAAAAACTATCGGTATTGCTGCTCGCCGACAAGGATCATCCACTTGTCCTCCCTCCCACAAGACATTAATGAAGAGGAGATTGCAAGTCTTTTACAGGAGCATGGAATCATTGTCAACTGCAAAGTCTTCGAGATGAATGGGAAAAAGCAGGCTCTTGTTCAATTCGAGAGCGAGGAAGAGGCAACTGAAGCCCTTGTATGCAAGCATGCAACTCCACTTTCCGGCTCCGTGGTTCGCATCTCCTTTTCGCAGTTGCAGAATATATGA 1329 0.4334 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQEIPSAVSAIQFYENAQPNIRGRNVYVQFSSHQELTTMDQNQGREDEPNRILLVTVHQMLYPITVDVLQQVFSPHGYVEKVVTFQKSAGFQALIQYETRQSAITARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQSGYGDAGMYGVQGPGPRSAGFSQMGNAAAVAAAFGGDFPPGITGTNDRCTILVTNLNPDRIDEDKLFNLFSIYGNIVRIKILRNKPDHALVQMGDGFQAELAVYFLKGTMLFGKRMEVNFSKHPNITQGADTHEYISSNLNRFNRNAAKNYRYCCSPTRIIHLSSLPQDINEEEIASLLQEHGIIVNCKVFEMNGKKQALVQFESEEEATEALVCKHATPLSGSVVRISFSQLQNI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04698 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vifa1g04698 442 MobiDBLite consensus disorder prediction 186 205 - -
Vifa1g04698 442 SUPERFAMILY RNA-binding domain, RBD 253 436 IPR035979 GO:0003676
Vifa1g04698 442 CDD RRM4_PTBPH3 358 436 - -
Vifa1g04698 442 CDD RRM3_PTBPH3 254 329 IPR034797 -
Vifa1g04698 442 Gene3D - 348 442 IPR012677 -
Vifa1g04698 442 Gene3D - 1 96 IPR012677 -
Vifa1g04698 442 CDD RRM1_PTBPH3 6 80 IPR034795 -
Vifa1g04698 442 Gene3D - 97 201 IPR012677 -
Vifa1g04698 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 439 IPR000504 GO:0003723
Vifa1g04698 442 Pfam RRM-like domain 97 174 IPR021790 -
Vifa1g04698 442 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Vifa1g04698 442 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Vifa1g04698 442 SMART rrm1_1 366 435 IPR000504 GO:0003723
Vifa1g04698 442 SMART rrm1_1 256 325 IPR000504 GO:0003723
Vifa1g04698 442 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vifa1g04698 442 SMART rrm1_1 101 170 IPR000504 GO:0003723
Vifa1g04698 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 339 - -
Vifa1g04698 442 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 4 438 IPR006536 GO:0003723|GO:0005634|GO:0006397
Vifa1g04698 442 MobiDBLite consensus disorder prediction 186 214 - -
Vifa1g04698 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Vifa1g04698 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 432 IPR000504 GO:0003723
Vifa1g04698 442 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 420 - -
Vifa1g04698 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 329 IPR000504 GO:0003723
Vifa1g04698 442 Gene3D - 252 347 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04698 Vifa-Chr1 733155325 733161050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04698 K14948 - gmx:100798234 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04698 1 733155325 733161050 Vifa1g04698 1 733155325 733161050 ECH
Vifa1g04698 1 733155325 733161050 Vifa3g02772 3 768898013 768901802 PCT