Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02292 ATGGCGGCCGGTACTACATCACCAACCGATCGTCCCTCCGTCGCTCCATCCGCTCTTCAACCTCCGCCGCCAATGCTCGTCTCTGATTCATTTGCCAAAGACGCTATCCTCGCTTGGTTTCACGGCGAGTTTGCTGCTGCCAACGCGATTATCGACGCTCTCTGTTCTCATCTTTCTCACCTTTCCTCTGCCTCTGATTACACCTCTGTTTTCGCGGCTATTCATCGTCGCAGACTCCATTGGATCCAAATCCTTCAGATGCAGAAGTATCACTCCATTGCAGATGTCGCTCTTCAGCTTAAAATTGTTGCTGAGAACATAAATACCGTTGAGGTTGTTAACGAAAACCACGTCGTGCCGGAGGAGGAGGAACGGAAAACAGAGGACAAACTGATCGACGCTGGTATTGCTAATGAACACGAAGAGTATGATTCTCCTGAGAGTGAGGTTACTGATTCAGGATCTCAAGAAAATCAAACTAGTTCGATGAACAGTGATATATGTTCCAATCATGAAGAGTGTGAAGGACGGCCTTCACAGTTTAAGTTGACAAAAGGTTTCTCAGCAAAGGAGTCGGTGAAGGGGCATATGGTGAATGTAGTGAAAGGGTTGAAGTTATACGAAGACATTTTCACGGATTCAGAATTGTGCAAGCTGTCAGATTTTGTGGATGAGATACATACTGCTGGTCAGAACGGAGAACTGTCTGGTGAAACTTTTATACTATTCAACAAACAGATAAAGGGTAATAAGAGAGAGCTGATTCAGCTGGGTGTTCCAATATTTGGACAAATAAAGGAAGACTCAAAAAGTAATATAGAGCCAATTCCAGCACTTCTACAACATGTCATTGATCACTTTATTCAATGGCACTTACTTCCAGAGTACAAAAGACCAAATGGTTGCATCATCAACTTTTTTGAAGAGGGGGAGTATTCTCAGCCATTCTTGAAACCACCACATCTGGATCAACCTGTGACCACTCTTCTTCTCTCTGAATCAACCATGGCTTTTGGGCGTATCCTTATGAGTGAAAATGACGGGAACTACAAGGGACCACTCATGCTCTCATTGAAGAAGGGGTCGCTTGTAGTGATGAGAGGAAACAGTGCTGACATGGCCAGGCATGTAATGTGTCCATCTCCTAACAGAAGGGTGAGCATCACCTTCTTTAGAGTGAGGCCAGATTCCAATCAATGCCAATCACCAACTCCTACCATGACAAGCGCAGTGACTCTATGGCAGCCTGCCATTGCTAACCCATATGCTTTGCCAAATGGAGCTCTAAATTGCGGCTACGAGGGTATGGACATGATGATGCCCAAATGGGGAATGCTTCCCGGCCCAATGATGATGCTGACCCCTATGCGTCCTATGGCATTGAATCCCCGCAAACTTGCTGGTGGTGGTACTGGAGTCTTCTTGCCCTGGAATGTTCCGTCCAGAAAACCTGCAAAGCATCTTCCACCACGTGCACAAAAGGGAAGGCTTCTAGCATTGCCTCCTCCTGTTGAACCACACATTGGAGAGTCCACTTCTGAACCAACCATTTGTGTTGAAGGATGA 1566 0.461 MAAGTTSPTDRPSVAPSALQPPPPMLVSDSFAKDAILAWFHGEFAAANAIIDALCSHLSHLSSASDYTSVFAAIHRRRLHWIQILQMQKYHSIADVALQLKIVAENINTVEVVNENHVVPEEEERKTEDKLIDAGIANEHEEYDSPESEVTDSGSQENQTSSMNSDICSNHEECEGRPSQFKLTKGFSAKESVKGHMVNVVKGLKLYEDIFTDSELCKLSDFVDEIHTAGQNGELSGETFILFNKQIKGNKRELIQLGVPIFGQIKEDSKSNIEPIPALLQHVIDHFIQWHLLPEYKRPNGCIINFFEEGEYSQPFLKPPHLDQPVTTLLLSESTMAFGRILMSENDGNYKGPLMLSLKKGSLVVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPTPTMTSAVTLWQPAIANPYALPNGALNCGYEGMDMMMPKWGMLPGPMMMLTPMRPMALNPRKLAGGGTGVFLPWNVPSRKPAKHLPPRAQKGRLLALPPPVEPHIGESTSEPTICVEG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02292 521 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g02292 521 MobiDBLite consensus disorder prediction 502 521 - -
Vifa3g02292 521 Gene3D - 187 402 IPR037151 -
Vifa3g02292 521 MobiDBLite consensus disorder prediction 137 171 - -
Vifa3g02292 521 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 32 497 IPR044842 GO:0003729|GO:0006402|GO:0032451
Vifa3g02292 521 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 298 395 IPR005123 -
Vifa3g02292 521 MobiDBLite consensus disorder prediction 149 169 - -
Vifa3g02292 521 SUPERFAMILY Clavaminate synthase-like 195 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02292 Vifa-Chr3 578258273 578262555 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02292 K10767 - gmx:100791586 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02292 3 578258273 578262555 Vifa3g02292 3 578258273 578262555 ECH
Vifa5g02507 5 831528800 831533214 Vifa3g02292 3 578258273 578262555 PCT