Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01405 ATGGCGACGATGTCTCAAGCTAATTCTACGAGAATGTATTCTTGGTGGTGGGATAGTCACATAAGCCCTAAGAACTCAAAATGGCTCCAAGAAAATATCACCGATATGGATTTCAAGGTGAAGCAAATGATTAAGCTCATTGAAGAAGATGCGGATTCCTTTGCCAGGAGGGCGGAAATGTACTATAAAAAACGGCCGGAGCTTATGAAAATGGTCGAGGAGTTTTATAGGGCATACCGAGCGTTGGCTGAGAGATACGATCATGCAACTGGAGTGATCCGCCAAGCACATCGGACCATGTCTGAAGCATTTCCTAATCAAGTTCCTATGATGATCACGGATGATATGGAGCCTGAGCCGCGTACTCCTGATACTCGCCATCCTTCACGCGCATTTCTTGATTCGGATGAATTAGAAAAGGACACTCATGTTATCAAAAGAAACGGAGCGTTTAATGAAGAATCTTATTCTCCTTTGAACAATACAGGTTTGAGACAGCTCAGTAATCTCTCCATCCCTCGAGAACACGCCAAGTTTGCAGAAGGGCGTGCTAGAAGGGGGCTCAATTTTTTAGAGACGGAGGAGGAAACTAGCGAGCTGAAAAACGGAAGCCAAAACACTAAGGCTCAAGTTTTGTCTGAGTCCGAACGTGTGACAAAAGCTGAAGCGGAAATCTCAGCCTTAAAGAAAGCACTTGCCAAATTAGAAGATGAAAAGGAAGCTGGGTTGCTTCAGTATCAGAAGAGTTTGGAGAAATTATCTAATCTTGAATTAGAAGTGTCTTCTGCACAAGAGATTTATCAAAGACTTGATGAACGAGCAAGCAAATCAGACGCTGAAGTTCAATGCTTGAACGAAGCAGTAAACAAATTACAGGTTGAAAAGGAAGCTTATCTTCTTCAGTACCAGAAATGCTTGGAGAAAATAACCAGTCTGGAGAAAGATGTTTCTTCTTCTGAGAAGGACGCGGAAGAGTTTAACGAACGCGCTACTAAAGCTGAAACTGAAGTTGAGTTGTTGAAGCTGGACCTCGTTCGAGTAGAAGCTGAAAAGGAAGCTGCCCTTGTTGAATATAAACAGTGCTTGGAGACTTTATCGAATCTGGAGAAGAGATTAAAAGAATCCGAGGAGAATGCTAGAAGGATTAACGAGCAAGCTACTATAGCTAGAAATGAAATCGAGGCTTTGAAGTTGGAAGTTACTAAACTTAATGAAGAGAAGGAAGACAATGCTCTCCGGTATCAGCAATGCTTGGAGATAATTTCCAGTTTGGAACATAAACTTTCGTGTGCCGAAGAGGAGGTTCGTCGGTTAAATTCAAAGATCGATGACGAGGTTGAAAAGTTACATAGTTCCGAACAGAAGTGTCTTCTTTTGGAAACATCAAATCATGCTCTACAGTCTGAATTACAGTCTTTGGAACAAAAAGTGGGGTCTCAAAGTGAAGAACTTAATGAGAAGCAGCAAGAATTGAGTAAACTTTGGAGTCGTGTACAAGAGGAGAGACGGCATTTCATTGAGGCTGAAACCGCTTTCCAAACTCTTCAGCATTTGCATTCTCAATCTCAGGAAGAGCTTAGATCTTTTGCTGCCAACTTGCACAGTAAAGCGGAATTACTCAGGAATATCGAATTGTGTAAGGAGGCTCTAGAGGATGAAGTGCGCAAAGTCAACGAGGAAAACAAAATTCTAAACGAGGTCAAGGTTTCTTCTTCTTTGTCTATAAAAACTTTGCAGGATGAGATAATGAATTTGAAAGACACAATAGAGAAACTCGAACAGGAGGTTGAGCTGCGACTTGATGAAAGAAATGCTCTTCAGCAAGAAATTTACTGTCTTAAAGAGGAGCTTAATGGCATGAATAAAAAACACGAAGATTTGATGGAGGAGGTCAGGTCAGCTGACTTAGATCCTAAGTGCTTTGGCTTGTCTGTGAAAAAATTGCAAGACGAGAACTCGAAGCTGAAAGAGACGTGTGAGGCTGAGAAAGATGAGAAAATGGCTCTTTTGGTGAAATTGGAAACAATGGAGAGACTTTTGGAGAAGAATTCGGTTTTAGAGAATTCCATTTCAGACTTGAACTCTGAGTTGGATAGTCTAAGAGGAAAGGTAAATGTCTTGGAAGAAACATGCCAGACTTTGCTTGCGGAGAAATCAACTCTTTCTTCTGATAAGGACACCTTGTTTTCTCAATTACAAGCCACAACCGAGAAGCTGGAAAAGCTCTCGGAAAATAACAACCTTCTGGAAAATTCACTGTTTGATGTCAATGCTGAACTTGATGGATTAAGGGGAAAGTCCAAGATCTTAGAAGAAACGTGCCGGTTACTCGAACATGATAAGTCCTCTATCTTTTCAGAGAAAGAAGCCTTAGTTTCAGAGTTGAACACCACTCACCAAATGCTGAAGCATCTTGAAAAACAACACAGTGAATTGGAACTAATGCATTCGGAGCTAAAAGGAGAAAGGGAGTCTGCACTTCAAAAGGTAGAAGAGCTATTGGTTTCCCTATATTCTCAAAGAGAAGAACATTGCAGAGTTTTGAAACTGAATGAAGACGAAGTGGCAAACAAAGAATTACAAATTCATACCATGCAAGAAGATGCAAAGCGCCAGAAAGAAGCATATGACGAGGAGCTGGATAGAGCTGTACATGCTCAAATTGAAATTTTCGTCTTGCAGAAGTTTATCCAAGATTTGGAGAAGAAAAACTTTTCCCTTCTAGTTGAGTCCCAGAGACTTTTGGAGGCGTCTAAAATGTCTGACAGAATGATTTCTAAATTGGAGACTGAGAGTATTCAAAAGCAAGATGATGTGAATTCTTTGTCTGAGAAGCTTAAAATACTAAGAATTGGGCTGCTTCAGGTGGTGAAGACTCTTGACACTAACAGGGATCATTTCTTTGAAGATATGCTCGAAGAAGACCAAGCTCTCTTGAACCATATACATCGAAAACTTAAGGAGAGACAAGAGTCTTTTGACGCAATTTTCAACGAAAGCCTCCACACGGCCGTTCAGAATTCAGTTCTGATTACATTTCTTGAACAGTTGAAATTGAAGGTAGAAAGTCTTGTGATAGAAAAAGACGCGCTTGACGATGAGTCTAGGATACAGTCTAAGCAGTTCATGGAATTGCAAATGGAGTTCCAAAAGATATCGGAGATGAATCAGGAATTGAAGCTGACAATAATCAAAGGAGAAGAGAGAATAGAAGGAATGACATCTGAAATGGATAATCTACACAAAGAGCAGTCGGACTTGGAAAAGAGCTACAAGAACTTACAGGAGGAAAACTGCACGATATTGGAAGAGAAAAAGTCCTTGATGAGAAGCTTTAAAGATTTGAATGAAGAGAAGGTTAACTTGGAAAATGAAATTTTTGTTATGTTCCATGAGACATTAGTTCAATCTAATGTTTCTGTGGTTTACCGGAATATTATCTTTGAAAAACTCGGGGAACTTGAACAGCTTGGTCAAGAGCTTGATAAGCTCGGTTCAAATAATAATAACCTTGAGGAGAGATTGATGATAATGGCACACAAATTAGAAAGCAAAGAAAAGGAAAATTCTCATCTTAAAGAGTTATTTGTGAAGTCAAATGTTGAATTGAATTTAGTTGAATCTGTCAATGATCAATTGAATTGTCAAATTAGAAATGAAAAGGAAATGTTGTGTCAAAAGGAAATTGTGCTTTTGGAAGCAGCTAAGACATTTCATGCTTTACAGACCGAGAAGAAAGAGTTACAAAGAACGGTGGAAGATCTGAAGATTAGATATGATGATGCCAAGGAGAAACTTGAAGAGCAAGCTAATCAAGTTTTTAAGTTGTCGTCAGACAAGGACCGTCAAAATGAAGAGCTTGGAGGCCTTTATGAAGCAAACCAAAAATTGGAATCTTTGATGAAGTGTCTACACCATGAACTTGAAGAGACTAAAACGAGGGAAAAGAAGCTAAATTATGAAGTACATGAAGGAATAAATGAGATTGAACAATGGGAAACTCAGGCTACAGCACTCTACGCCGAACTGCAGATTTCTGCTGTCAATGAAACATTATTTGAAGGGAAGGCCTGCGAGCTAGCGGATACATGTGAGCATCTTGAGCGGATTAACAACTCGAAAGACATGGAAAGTGAACAGATGAAAGAATTAGTTAACAAGTTGGAAGGTGAAAATGCGAAACTGTATGGTCAGTTAGCTGCGTATATTCCAGCTATCAGTGCTTTGAGTGATTGCGTAACATCCTTAGAGGTGCAGACTCTTGGACATGCAAAACATCATGACTATGAAAAACCGGAGGTTAAGAATTTGGTGAGTCACCAATATACTGAAAATGGTCAACAGATAGATGAAGATCAAACTGTTACGAAACCAGATCCACTTCTTGAATTCCAAAACCTGCAGAGGAGGATCAATGAAATTTCAGTGGCAGTTAATACTTTAAACGGAAGTTTCAAACCGGAGAATGAAATGAGAGAGATTCAAGAAGCAAAGGAGAAGTCAAGGCCAGATAATCCTGTAACTGAGATTGAAGTACTACCAAAAGACATCATGCTTGATCACATATCTGAAAGTTCATCCTATGGAATAAGCAGGAGAGGAACTCTTGAGTCTGATGATCACATGCTTGAGTTGTGGGAAACATCTGATAAGACACAGAAGATGGCAGCAGAACCGGTAGAAGATTATCGTCAAAGAGGAGTGGCCAAAAAACCCTACAACAAACATCCTTCAGGAGTTTCCTTGTTGGAAAAGGAATTGAGTGTGGACAAGTTAGAGATTTCAAGAAGATTGTCGCGGCCGCGTGAAGAAGCCAACAAGAGCAAGGTTTTGGAAAGACTTGATTCCGATGCACAGAAGTTATCAAACCTTCAAATAACCATACAAGATTTGATGACGAAAGTTGAAACTACCGAGAAGAGCACAAAAAGGAAAGGTACCGAGTATGATACGGTTAAAGGACAGCTCGAAGCTTCTGAGGAGACTGTCACGAAGTTGTTCGATGCCAACCGCAAGCTGATGAAAAATGTAGAAGAGGGTGCAATGTCTTCAGCTGGGAAGGCAGCAGCAGAGTCAGGTGAGATTGGAAACGTCAGCAGGAGGAGAGTTTCGGAACAGGCACAGAGAGGATCAGAGAAAATAGGACAACTTCAGTTGGAGGTGCAAAGACTGCAGTTTCTTCTTTTGAAACTGAATGATGGAAAAGAAATCAAAGAGAAAACAGGAATGGTTGATCAAAGTTCGAGAGCACGTTTGCGAGATTATCTCTATGGCGGGACAAGAACCAACCATCAAAAGAAGAAAAAAACACCATTTTGTGCATGTGTAAGACCACCAACCAAGGGAGATTGA 5352 0.4023 MATMSQANSTRMYSWWWDSHISPKNSKWLQENITDMDFKVKQMIKLIEEDADSFARRAEMYYKKRPELMKMVEEFYRAYRALAERYDHATGVIRQAHRTMSEAFPNQVPMMITDDMEPEPRTPDTRHPSRAFLDSDELEKDTHVIKRNGAFNEESYSPLNNTGLRQLSNLSIPREHAKFAEGRARRGLNFLETEEETSELKNGSQNTKAQVLSESERVTKAEAEISALKKALAKLEDEKEAGLLQYQKSLEKLSNLELEVSSAQEIYQRLDERASKSDAEVQCLNEAVNKLQVEKEAYLLQYQKCLEKITSLEKDVSSSEKDAEEFNERATKAETEVELLKLDLVRVEAEKEAALVEYKQCLETLSNLEKRLKESEENARRINEQATIARNEIEALKLEVTKLNEEKEDNALRYQQCLEIISSLEHKLSCAEEEVRRLNSKIDDEVEKLHSSEQKCLLLETSNHALQSELQSLEQKVGSQSEELNEKQQELSKLWSRVQEERRHFIEAETAFQTLQHLHSQSQEELRSFAANLHSKAELLRNIELCKEALEDEVRKVNEENKILNEVKVSSSLSIKTLQDEIMNLKDTIEKLEQEVELRLDERNALQQEIYCLKEELNGMNKKHEDLMEEVRSADLDPKCFGLSVKKLQDENSKLKETCEAEKDEKMALLVKLETMERLLEKNSVLENSISDLNSELDSLRGKVNVLEETCQTLLAEKSTLSSDKDTLFSQLQATTEKLEKLSENNNLLENSLFDVNAELDGLRGKSKILEETCRLLEHDKSSIFSEKEALVSELNTTHQMLKHLEKQHSELELMHSELKGERESALQKVEELLVSLYSQREEHCRVLKLNEDEVANKELQIHTMQEDAKRQKEAYDEELDRAVHAQIEIFVLQKFIQDLEKKNFSLLVESQRLLEASKMSDRMISKLETESIQKQDDVNSLSEKLKILRIGLLQVVKTLDTNRDHFFEDMLEEDQALLNHIHRKLKERQESFDAIFNESLHTAVQNSVLITFLEQLKLKVESLVIEKDALDDESRIQSKQFMELQMEFQKISEMNQELKLTIIKGEERIEGMTSEMDNLHKEQSDLEKSYKNLQEENCTILEEKKSLMRSFKDLNEEKVNLENEIFVMFHETLVQSNVSVVYRNIIFEKLGELEQLGQELDKLGSNNNNLEERLMIMAHKLESKEKENSHLKELFVKSNVELNLVESVNDQLNCQIRNEKEMLCQKEIVLLEAAKTFHALQTEKKELQRTVEDLKIRYDDAKEKLEEQANQVFKLSSDKDRQNEELGGLYEANQKLESLMKCLHHELEETKTREKKLNYEVHEGINEIEQWETQATALYAELQISAVNETLFEGKACELADTCEHLERINNSKDMESEQMKELVNKLEGENAKLYGQLAAYIPAISALSDCVTSLEVQTLGHAKHHDYEKPEVKNLVSHQYTENGQQIDEDQTVTKPDPLLEFQNLQRRINEISVAVNTLNGSFKPENEMREIQEAKEKSRPDNPVTEIEVLPKDIMLDHISESSSYGISRRGTLESDDHMLELWETSDKTQKMAAEPVEDYRQRGVAKKPYNKHPSGVSLLEKELSVDKLEISRRLSRPREEANKSKVLERLDSDAQKLSNLQITIQDLMTKVETTEKSTKRKGTEYDTVKGQLEASEETVTKLFDANRKLMKNVEEGAMSSAGKAAAESGEIGNVSRRRVSEQAQRGSEKIGQLQLEVQRLQFLLLKLNDGKEIKEKTGMVDQSSRARLRDYLYGGTRTNHQKKKKTPFCACVRPPTKGD 1783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01405 1783 Coils Coil 1014 1034 - -
Vifa3g01405 1783 Coils Coil 1621 1641 - -
Vifa3g01405 1783 Coils Coil 1154 1188 - -
Vifa3g01405 1783 Coils Coil 788 822 - -
Vifa3g01405 1783 PANTHER PROTEIN NETWORKED 4A 272 376 - -
Vifa3g01405 1783 SUPERFAMILY Tropomyosin 389 631 - -
Vifa3g01405 1783 Coils Coil 1367 1398 - -
Vifa3g01405 1783 Coils Coil 645 665 - -
Vifa3g01405 1783 Coils Coil 309 490 - -
Vifa3g01405 1783 Coils Coil 1231 1286 - -
Vifa3g01405 1783 Coils Coil 1063 1097 - -
Vifa3g01405 1783 Gene3D - 666 851 - -
Vifa3g01405 1783 SUPERFAMILY Tropomyosin 193 408 - -
Vifa3g01405 1783 Coils Coil 218 301 - -
Vifa3g01405 1783 Coils Coil 848 886 - -
Vifa3g01405 1783 Coils Coil 1105 1125 - -
Vifa3g01405 1783 Coils Coil 1294 1314 - -
Vifa3g01405 1783 Coils Coil 676 717 - -
Vifa3g01405 1783 Coils Coil 536 567 - -
Vifa3g01405 1783 Coils Coil 575 637 - -
Vifa3g01405 1783 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Vifa3g01405 1783 Coils Coil 925 945 - -
Vifa3g01405 1783 Coils Coil 725 759 - -
Vifa3g01405 1783 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01405 Vifa-Chr3 366889305 366894879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01405 - - lang:109335385 2188.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01405 3 366889305 366894879 Vifa3g01405 3 366889305 366894879 ECH
Vifa5g02581 5 859626688 859632411 Vifa3g01405 3 366889305 366894879 PCT