Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01140 ATGGCGGCCGTCACCCGCCTTTCCACGCGCGCGTCTTTTGTCTCTTCCATTGCAAACCGATATCTATCCTCCGAGCTCACCTCCCACGCGCCACTCCGTCTTGTTCCTACGCGCGGCGAAGATCAGAAGAACAGTCACGTACGGTGGGTCTTCCTCGGTTGTCCTGGCGTCGGGAAAGGGACCTACGCTAGCCGTTTATCTAATCTCCTCGGCGTTCCTCACATCGCCACCGGTGATCTCGTTCGCGAAGAGCTCGCTTCCTCTGGTCCTCTCTCTTCACAGCTATCGGAAATTGTAAATAAAGGTCAACTGGTGTCAGATGAAATTATTATAAATTTATTGTCAAAGAGACTTCTTGCTGGGGAAGCTAAAGGTGCTCTGGGATTTATTCTTGATGGTTTTCCGCGAACAATTAAGCAAGCGGAAATATTAGAAGGGGTAACTGATATTGACTTGGTTATCAATCTAAGGCTTCAAGAAGATGTACTGCTTGAGAAATGCCTTGGGAGGAGGATTTGCAATCAGTGTGGGGGAAATTTTAACGTTGCTTCCATTGACATCAAGGCTGAGAATGGGAGCCCTGGAATTGTCATGGCTCCGCTTCTTCCTCCTGTCAATTGTATGTCGAAGCTCATTACTCGGTCAGATGATACTGAACTAGTTGTCAAAGAAAGGCTTCGAATATACAATGAATTGAGTCGGCCTGTGGAGGAGTTTTACCGAAATAGAGGGAAGTTATTAGAGTTTAACCTGCCTGGAGGAATCCCAGAATCTTGGCCAAAGTTGCTACATGCTCTTAATCTTGATGATTATGAGGATAAGCACTCTGCTGCAGCATAA 840 0.469 MAAVTRLSTRASFVSSIANRYLSSELTSHAPLRLVPTRGEDQKNSHVRWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVREELASSGPLSSQLSEIVNKGQLVSDEIIINLLSKRLLAGEAKGALGFILDGFPRTIKQAEILEGVTDIDLVINLRLQEDVLLEKCLGRRICNQCGGNFNVASIDIKAENGSPGIVMAPLLPPVNCMSKLITRSDDTELVVKERLRIYNELSRPVEEFYRNRGKLLEFNLPGGIPESWPKLLHALNLDDYEDKHSAAA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01140 279 Hamap Adenylate kinase [adk]. 47 267 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vifa3g01140 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 266 IPR027417 -
Vifa3g01140 279 PRINTS Adenylate kinase signature 129 145 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vifa3g01140 279 PRINTS Adenylate kinase signature 50 63 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vifa3g01140 279 PRINTS Adenylate kinase signature 231 245 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vifa3g01140 279 PRINTS Adenylate kinase signature 78 92 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vifa3g01140 279 PRINTS Adenylate kinase signature 214 229 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vifa3g01140 279 NCBIfam adenylate kinase 48 266 IPR006259 GO:0004017|GO:0005524|GO:0016776
Vifa3g01140 279 Pfam Adenylate kinase 52 244 - -
Vifa3g01140 279 PANTHER NUCLEOTIDE KINASE 29 263 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vifa3g01140 279 CDD ADK 48 250 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vifa3g01140 279 ProSitePatterns Adenylate kinase signature. 129 140 IPR033690 -
Vifa3g01140 279 Gene3D - 36 270 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01140 Vifa-Chr3 297532264 297535743 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01140 K00939 - gmx:100777619 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01140 3 297532264 297535743 Vifa3g01140 3 297532264 297535743 ECH
Vifa5g02907 5 960642786 960644258 Vifa3g01140 3 297532264 297535743 PCT