Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01051 ATGGACTCACACAAGCAACTTTTCATCCTCTTATGCCTTTCTCTAGCTCTTGTACTTCTTTCAGGGCTGCAAGTTGAGGCCAAGCGTCACATCAAATATCATCCTTCAAAAGAGTTGTTTGTTTTTGGGGACTCATATGTTGATACTGGCAACACCCCAAAAACTAAACCTGGTTCATGGAAACAACCTTATGGCATAACCTTTCCCGGAAAACCAGCCGGAAGATTTTCTGATGGAAGAGTTTTAACTGACTTCATTGCAAAGTATTTGGGATTGAGATCACCTATTCCCCACAAATTCAGGAATATTGTAGCTAAGAATTATTTGAAGTATGGAATGAACTTTGCATATGGTGGTACAGGTGTATTTGATACATCCACTTCAGGTCCAAATATGACTTCTCAAATTGATTCCTTCAACCAACTTGTTCAAGAAAATACTTACACTCAATCAGATATCACAAAATCTATTGCTTATGTATCTGTTGCTGGAAATGACTACAATCATTACTTGGCCACAAATGGCTCTCTTCAGGGTTTTCCATCTTTCATTGCCTCAGTGGTTAAACAAACCACCACCAATTTGGTTCATCTCCAAAGATTAGGGTTTAAGAGAATTGTTGTGGGTGCTTTACATCCTCTTGGTTGTCTTCCTCAATCTACTGCTCAAACATCATTCCAAAGTTGCAATAGTACATTCAATGATCTTGTAGCTCTCCACAACAATCTGTTGAATCAATCTGTGACAAAGTTGAACCGAGAAACCAAAGATCACACCACCTTTGCTATTCTAGATATTTTTGACAGTTTTAACTCGGTGTTGAATAATCCTTCAAGACATAACATCAAGGAACGTTTGAAGCCATGTTGCTTTGGAGTTAGTAGTCAGTATAATTGTGGAAGTGTGGATGAGAATAATGTTAAGAAATATCTGGTTTGTGAAAATCCAGAATCAACTTTCTTTTGGGATCGGTTGCACCCTACACAAGCTGGTTGGAATGCTGTCTATAATGAGTTGAAGATTAAAAGTCTTCATCAAATTCTATACTAG 1050 0.3781 MDSHKQLFILLCLSLALVLLSGLQVEAKRHIKYHPSKELFVFGDSYVDTGNTPKTKPGSWKQPYGITFPGKPAGRFSDGRVLTDFIAKYLGLRSPIPHKFRNIVAKNYLKYGMNFAYGGTGVFDTSTSGPNMTSQIDSFNQLVQENTYTQSDITKSIAYVSVAGNDYNHYLATNGSLQGFPSFIASVVKQTTTNLVHLQRLGFKRIVVGALHPLGCLPQSTAQTSFQSCNSTFNDLVALHNNLLNQSVTKLNRETKDHTTFAILDIFDSFNSVLNNPSRHNIKERLKPCCFGVSSQYNCGSVDENNVKKYLVCENPESTFFWDRLHPTQAGWNAVYNELKIKSLHQILY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01051 349 Pfam GDSL-like Lipase/Acylhydrolase 39 337 IPR001087 GO:0016788
Vifa3g01051 349 PANTHER OSJNBB0059K02.9 PROTEIN 5 348 - -
Vifa3g01051 349 SUPERFAMILY SGNH hydrolase 36 339 - -
Vifa3g01051 349 CDD SGNH_plant_lipase_like 39 339 IPR035669 -
Vifa3g01051 349 Gene3D SGNH hydrolase 27 342 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01051 Vifa-Chr3 261162211 261163978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01051 39 330 Acyl Lipid Metabolism Gene Families AT4G10950 28.349 1.45e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01051 - - gmx:100789208 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03205 5 1061339180 1061340636 Vifa3g01051 3 261162211 261163978 PCT