Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00966 ATGAGAACCTCTTCTTCTTCAATGAAGCTGTTCTTGTCTTTGCTTCCTCTTATTCTTGTTGCAGTTGTTGTGATTGTTTCTGTGATGAGTCCAGAAGAGAGAGAAAAGATTGTGGACTTGAGATCTGAAGCGGTGGTGGAAGTGGTGGGTGGTGACAATGGTTTTCATCTTTCTTCTACAACACCGTTTCTTGTTGATAGTATACAAACACTTCCACAATCTAACGAAACAGAAGTTGTCAACATTTCCAAGCCTTGGGTCAAAAGTACTGTCCCATTGAATGAAACTTATGTGCCTCATTCAAGAAAGCTCAGCATCTTAGATAGAACAGAAGCTGGTTTATTACAAGCTCGAGCTGCTATTAAAGAAGCCGTCAATGGCAATCAAACACAAGATCCAGATTATGTTCCAATAGGTCCAATGTATTGGAATGCTAAGGCATTTCACAGGAGCTACTTAGAAATGGAAAAACTGTTCAAAGTATTCGTCTACGAAGAAGGGGAGATCCCAGTTTTTCACAACGGACCTTGCAAAAGCATATACTCTATGGAAGGGAACTTTATTCATGCTATTGAAATAAATGACCAATTTCGAACGAGAGATCCTGAAAAAGCACATGTTTTTTTCCTTCCATTCAGCGTGGTAATGTTAGTCAGATTTGTTTATTTAAGAGATTCTCGTGACTTTAGCCCTATAAGAGAAACTGTTACGGATTATATCAATGTCATTTCTGAAAAATATCCGTATTGGAATCGAAGTCTTGGAGCTGATCATTTCATGCTAGCTTGCCATGATTGGGGGCCGGAGACTTCATTCTCGGTACCATACCTACATGAGAACTCCATTCGCGTACTATGCAACGCCAACACCTCCGAAAAATTCAACCCTGCAAAAGATGTTTCATTACCCGAAATCAATCTCCAAACAGGTTCGATAAATGGTTTTCTAGGTGGACCGTCAGCATCTAAACGTTCGGTTTTAGCTTTCTTTGCAGGAGGACTTCATGGTTATATAAGATCGATACTTCTCGAACATTGGGAAAACAACAAGGATCAAGACATCATGGTTCAAAAGTATCTTCCAAAGGGTGTTTCTTACTATGAAATGTTAAGGAAGAGCAAGTTCTGTCTCTGTCCAAGTGGTTACGAGGTGGCTAGTCCGAGAATAGTCGAGGCAATTTACACAGGTTGTGTTCCAGTACTTATTTCAGATCATTACATTCCTCCGTTTAGTGATGTTTTGAATTGGAAGTCTTTCTCGGTTGAGGTTTCGGTTGAAGATATTCCGAAGTTAAAGGATATTCTGATGAGAATAACTCCGACACAATATATAAGAATGCAGAGAAGAGTTGGACAGATTAGGAGACATTTTGAGGTACATTCTCCACCAAAGAGATTTGATGTGTTTCATATGATACTTCATTCTGTTTGGCTTAGAAGATTGAACTTCAGAGTCCATGATGATCAATAA 1470 0.3925 MRTSSSSMKLFLSLLPLILVAVVVIVSVMSPEEREKIVDLRSEAVVEVVGGDNGFHLSSTTPFLVDSIQTLPQSNETEVVNISKPWVKSTVPLNETYVPHSRKLSILDRTEAGLLQARAAIKEAVNGNQTQDPDYVPIGPMYWNAKAFHRSYLEMEKLFKVFVYEEGEIPVFHNGPCKSIYSMEGNFIHAIEINDQFRTRDPEKAHVFFLPFSVVMLVRFVYLRDSRDFSPIRETVTDYINVISEKYPYWNRSLGADHFMLACHDWGPETSFSVPYLHENSIRVLCNANTSEKFNPAKDVSLPEINLQTGSINGFLGGPSASKRSVLAFFAGGLHGYIRSILLEHWENNKDQDIMVQKYLPKGVSYYEMLRKSKFCLCPSGYEVASPRIVEAIYTGCVPVLISDHYIPPFSDVLNWKSFSVEVSVEDIPKLKDILMRITPTQYIRMQRRVGQIRRHFEVHSPPKRFDVFHMILHSVWLRRLNFRVHDDQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00966 489 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 78 476 IPR004263 GO:0006486|GO:0016757
Vifa3g00966 489 Pfam Exostosin family 156 437 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00966 Vifa-Chr3 235617905 235620616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00966 - - gmx:100806278 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00966 3 235617905 235620616 Vifa3g00966 3 235617905 235620616 ECH
Vifa5g03131 5 1037580456 1037583753 Vifa3g00966 3 235617905 235620616 PCT