Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00306 ATGGACACGGCAGCGCAGCTCGTCTACCGTGGAATCGATCCTTTTCTCCGTTCCTCTCATTCCCGCCGTCACAAAAACATCTCTCTCCGTCGCCGTTCTAACCGCGTCTCCGCTGTCGCTACCGATCCTAAACCTGCTCCGGTCACAACCGTCAACGGTTCTTCAAAGTCTCCTCCTACCAAACCTGTCAACGGTGTCTCCCAGAGAATTGGTGATGTTTCCAAAGAGATTAAGAGAGTAAGGGCGCAAATGGAAGAAGATGAACAGTTGGCGACTCTCATGAGAGGTCTTCGAGGTCAGAATCTTTCAGATTCCCTCTTTGCTGAAGATGATGTTCAACTACGTCTTGTTGAGGTAGATGAAAGTAGTGAGTTTTTACCATTGGTGTATGAACCGGCTAGCATTACTGCATATTGGGGGAAACGTCCTCGCTCCGTGGCAACTCGCATTGTACAGTTATTATCTGTTGCTGGAGGTTTTCTTTCACGTGTTGCCTGGGATGTGATTAACAAGAAGGTTAAAGAGAATGAAGTTGCCAGGGCTATTGAAATACGTGAAATTGTGACATCTTTGGGTCCAGCATACATCAAACTCGGGCAAGCATTGAGCATTCGACCAGATATACTGTCACCTGCAGCAATGACAGAGCTACAGAAGCTCTGTGATAAAGTTCCTTCATTTGCAGATGATTTGGCTATGGCTCTAATTGAAGAGGAGCTTGGTCAGCCATGGCAAAGTTTCTATTCTGAATTATCACCCTCTCCCATTGCTGCTGCATCTCTCGGACAGGTATATAAGGGCCGCCTCAAGGAAAATGGGGATTTGGTTGCTGTTAAAGTGCAAAGACCTTTTGTGCTAGAGACTGTTACCATTGATTTATTCATTATCAGGAACCTTGGTTTGGCTCTTCGAAAGTTTCCTCAGATCTCCATTGATGTGGTTGGGTTGGTTGACGAGTGGGCTGCTCGATTTTTTGAAGAGTTAGACTATGTAAATGAAGGTGAAAATGGAAACCGTTTCGCCGAAATGATGAAGAAAGACCTGCCACAGGTTGTAATACCAAGGACTTATAGCAAGTATACATCAAGGAGGGTTCTTACGACAGAATGGATTGACGGAGAGAAGCTTTCACAGAGCAAAGAAAGCAACGTCGGAGAATTGGTTAACGTTGGAGTCATCTGCTACCTAAAACAGCTGCTTGATACTGGATTTTTTCATGCTGATCCACACCCAGGGAATATGATCCGTACTCCTGATGGAAAACTTGCGATACTTGACTTTGGGCTTGTTACAAAATTGACTGACGATCAAAAGTATGGAATGATTGAAGCAATTGCTCATCTCATCCATCGAGATTATTCAGCCATAGTGAAAGACTTTGTTAAACTCGGTTTCATTCCAGATGGAGTCAATTTAGAGCCTATCTTGCCAGTGCTTGCCAAAGTCTTTGATCAGGCTTTAGAAGGTGGAGGGGCAAAAAACATAAATTTTCAAGATCTGGCATCAGATTTAGCTCAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCTCTTATAATCAGAGCTATTGGGGTTCTTGAAGGGATAGCTTTAGTTGGAAATCCTGATTTTGCCATTGTTGACGAAGCCTATCCATATATTGCACAGAGGCTTTTGACGGATGAATCCCCTCGGCTACGGAGTGCTCTACGTTACACTATATATGGGAAATCTGGAGTTTTTGATGCTGAAAGATTTATCGATGTCATGCAAGCATTTGAGAATTTTATTACAGCTGCCAAAAGTGGAGGTGGAGAGGATCTGAAAGGGGATATGGCGGAGCTTGGGATTGTTACTAACAGGTCAGAATATCTCTTGCCGGGATTCCAGTCTGTGATACCTCAACAACAGCAGCCAGTGGAAACAAGGGCAGCCCTAGCATTTTTGCTGTCTGATAAGGGAAATTTTTTCCGAGAATTTCTATTGGACGAGATTGTTAAGGGCATTGATGCAGTAACTAGGGAACAACTGCCCGCAGCTCTTATACCCACCATTACTGAGGAGGATAAGATTATACTAAACAATGTCCAGAAAGTCCTGGAGTTCTTGACTGCAGGAAGTTCTCTGTCAAGCATATCTAGTCAAAGCACATCTAGTCAGATTATCCAAGAGCTTCTGCCAGTGTTGCCGGGTATCTCTACTAAAGTGCTTCCTGACGTTTTTAGCAGATTATCTTCTCGGGTATTCGCGCGATTAATTCGTGATGCATTTTTGTAA 2265 0.4375 MDTAAQLVYRGIDPFLRSSHSRRHKNISLRRRSNRVSAVATDPKPAPVTTVNGSSKSPPTKPVNGVSQRIGDVSKEIKRVRAQMEEDEQLATLMRGLRGQNLSDSLFAEDDVQLRLVEVDESSEFLPLVYEPASITAYWGKRPRSVATRIVQLLSVAGGFLSRVAWDVINKKVKENEVARAIEIREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFADDLAMALIEEELGQPWQSFYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLALRKFPQISIDVVGLVDEWAARFFEELDYVNEGENGNRFAEMMKKDLPQVVIPRTYSKYTSRRVLTTEWIDGEKLSQSKESNVGELVNVGVICYLKQLLDTGFFHADPHPGNMIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYSAIVKDFVKLGFIPDGVNLEPILPVLAKVFDQALEGGGAKNINFQDLASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLKGDMAELGIVTNRSEYLLPGFQSVIPQQQQPVETRAALAFLLSDKGNFFREFLLDEIVKGIDAVTREQLPAALIPTITEEDKIILNNVQKVLEFLTAGSSLSSISSQSTSSQIIQELLPVLPGISTKVLPDVFSRLSSRVFARLIRDAFL 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00306 754 SUPERFAMILY Protein kinase-like (PK-like) 222 456 IPR011009 -
Vifa3g00306 754 Coils Coil 70 90 - -
Vifa3g00306 754 CDD ABC1_ADCK3-like 219 460 - -
Vifa3g00306 754 ProSiteProfiles Protein kinase domain profile. 250 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00306 754 Pfam ABC1 atypical kinase-like domain 219 458 IPR004147 -
Vifa3g00306 754 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 72 747 - -
Vifa3g00306 754 Gene3D Transferase(Phosphotransferase) domain 1 251 445 - -
Vifa3g00306 754 MobiDBLite consensus disorder prediction 26 67 - -
Vifa3g00306 754 MobiDBLite consensus disorder prediction 47 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00306 Vifa-Chr3 35433284 35448918 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00306 K08869 - gmx:100779687 1273.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00306 3 35433284 35448918 Vifa3g00306 3 35433284 35448918 ECH
Vifa2g03087 2 881861881 881876536 Vifa3g00306 3 35433284 35448918 PCT