Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05001 ATGGCAAGCTTGAGAGTTTCTTGTGTGGTTGCATTGATGTGCATGGTCGTTATTACTGCACCCATGTCAGAGGCTGCAATCTCGTGCGGAGTGGTAGCTGGGGCCCTTGCTCCATGCATTGCTTATCTTAGGGGTGGTCGTGGTCCTTCACCACAATGCTGTGGTGGAGTGAGGAGACTTAACGCGGCGGCCCGAACTTCCCCCGACCGTAAGGCTGCTTGCAACTGCTTGAAAGGTGCTGCTCGTTCTATTCGTGGTTTGAATCCCAACGCCGCAGCTACTCTCCCTGGCAAATGTGGTGTTAGAATTTCCTACAGGATTAGCACCTCTACCAACTGTGCAGCCGTCAGATTCTAA 357 0.5266 MASLRVSCVVALMCMVVITAPMSEAAISCGVVAGALAPCIAYLRGGRGPSPQCCGGVRRLNAAARTSPDRKAACNCLKGAARSIRGLNPNAAATLPGKCGVRISYRISTSTNCAAVRF 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05001 118 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 7 114 IPR000528 GO:0006869|GO:0008289
Vifa2g05001 118 FunFam Non-specific lipid-transfer protein 26 117 - -
Vifa2g05001 118 SMART aai_6 29 113 IPR016140 -
Vifa2g05001 118 Pfam Protease inhibitor/seed storage/LTP family 29 113 IPR016140 -
Vifa2g05001 118 Gene3D - 26 118 IPR036312 -
Vifa2g05001 118 CDD nsLTP1 27 113 - -
Vifa2g05001 118 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 115 IPR036312 -
Vifa2g05001 118 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Vifa2g05001 118 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Vifa2g05001 118 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Vifa2g05001 118 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Vifa2g05001 118 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Vifa2g05001 118 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05001 Vifa-Chr2 1484964094 1484964561 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05001 6 117 Acyl Lipid Metabolism Gene Families AT5G59320 51.786 1.02e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05001 - - psat:127108121 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05001 2 1484964094 1484964561 Vifa2g05009 2 1486896185 1486896692 PCT