Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03919 ATGTTTCGATTTCTAGTTCTTGTGGCTGTAACAATGTTGGTGAGTTGTACGGATGCACTCAGAATGGCGAAAGCAGATGAATACACGCTAGAATCAGTTAGAGAATCTTTGATTCGACAAGAAGATACCATAATATTTAGTTTCATTGAGAGAGCAAAGTTTCCTCTCAATTCTCTCACATACCAACAAAACTACTCTTCCATTCCCAACTTTTCTCGTTCCTTGTTTGATTTCATTCTACACCAAACAGAGAACATTCAAGCCAAGACAGGAAGATACATGAACCCTGAAGAAAATCCTTATGAAGAAAAATTGTCACCACCAATTGTACCACATTACAATTTTTCACAGTTTTTGCATCCTGCAGCAGCTTCAATTAACATAAACAAGAACATAAAGAAACTATATTTCAACGATATACTTCCACTTTTTATTGCTTCTGGAGATGATGGCAATTATGCACAAACTGCATCCAACGATCTTACAATATTGCAGGCCATCTCTAAAAGGATTCATTATGGAAAGTTTGTAGCTGAGACAAAGTTCAGGAAATCTCCTCGTGACTATGAGCCTTTAATTCGGGCCAAGGACAGAGAAGCATTGATGAGTTTGTTGGTAGATAAGAGAGTAGAAGAGATGGTTCTAAAGAGAGTTGAAAAGAAGGCAATGGTGTTTGGTCAGGAAATGAGTCTTGATCCTAATGTCAAAGGAAAATACAAGGTTGATCCATCGATAGTTTATAGTTTGTATAATAAATGGATAATACCCATGACAAAAGATATTGAAGTCGAGTATTTATTAAGACGTTTGGATTGA 816 0.3627 MFRFLVLVAVTMLVSCTDALRMAKADEYTLESVRESLIRQEDTIIFSFIERAKFPLNSLTYQQNYSSIPNFSRSLFDFILHQTENIQAKTGRYMNPEENPYEEKLSPPIVPHYNFSQFLHPAAASININKNIKKLYFNDILPLFIASGDDGNYAQTASNDLTILQAISKRIHYGKFVAETKFRKSPRDYEPLIRAKDREALMSLLVDKRVEEMVLKRVEKKAMVFGQEMSLDPNVKGKYKVDPSIVYSLYNKWIIPMTKDIEVEYLLRRLD 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03919 271 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 21 271 IPR037039 GO:0004106|GO:0009073
Vifa2g03919 271 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vifa2g03919 271 PANTHER CHORISMATE MUTASE 17 271 IPR008238 GO:0004106|GO:0009073
Vifa2g03919 271 SUPERFAMILY Chorismate mutase II 26 271 IPR036263 GO:0046417
Vifa2g03919 271 PIRSF Chor_mut_AroQ_eu 17 271 IPR008238 GO:0004106|GO:0009073
Vifa2g03919 271 NCBIfam chorismate mutase 29 271 IPR008238 GO:0004106|GO:0009073
Vifa2g03919 271 ProSiteProfiles Chorismate mutase domain profile. 21 271 IPR008238 GO:0004106|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03919 Vifa-Chr2 1143450955 1143452460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03919 K01850 - gmx:100791095 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03919 2 1143450955 1143452460 Vifa2g03919 2 1143450955 1143452460 ECH
Vifa3g04617 3 1321883210 1321885164 Vifa2g03919 2 1143450955 1143452460 PCT