Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03414 ATGGAAGAGATTAATCCAATAAGTACAGGATTTTTTACTAGTGGTAGTAATATATGGAACAATGATTATGGATCACTACCTTATGAAGTGATCGAAGAGGGTGATCCAACATATGTTGCTATGATCCTCTCTGAGATAAAGGATTATTTACACCAGCTCATGAAACATCAGTTTGGCAACTATTTGATTCAAAAGATTTTTGAAGCAAAGAAAGGCATCACTAATATCCAAATAGATTCTATTGCTTACTTGATTATCTATGATACTCACAAGTTAAGAGACGTCTGCAAGAACAATCATGGAACTCGAGTTATTCAAATAATGCTAGAGAATATGAAATGTCCAGTCACAAAATATGTGGTATTGTATATGATGAAGCCTATCATTGATGAATTGATGAAAAATATTAATGGTGGTTATGTCATTGTGCAATGTGTGAAGGTTTTTCCACCCACACTCAAAAAGGTGATCTTGGATGAATTAGCAAAATATTGTGTTGAAATTGCAACACACAAGATTGGATGTTCAGTTCTTCAAACTTGTATTAAAGATAGTGAGATACTAGCCATGGGCTTGATAACACCAATAATCTCAAATGCTATGTTGCTAGCGGAAGATTGTTACGGAAACTATGTGGTGCAATTTGTAATTAAAATGAAGTTCCCGTTAGTAAATGAACGAATGATAGGAGAACTTTGTGGAAAATTTGTTAGACTCTCAATGAACAAGCATGCTAGCAATGTGGTGGAAGATTTAATGAGATGTTCTAATCAAGATGATGTTAATGCTATAGTAGAAGACCTAATAAGAAGCACTGATTTCTTGAATGTTATTCAAGATCCTTATGGGAATTATGTTGCACAAAGAGCACTAAAATGCACTAAGGGCTATCTACGTAGAAAACTTTCTTTTACCATTCGATCCTATCGCAATGACCTTCAAAACCATCCACATGGAAAACTAGTGTTGGACAATGCCAAATCTAGCAAGCGATGA 996 0.3454 MEEINPISTGFFTSGSNIWNNDYGSLPYEVIEEGDPTYVAMILSEIKDYLHQLMKHQFGNYLIQKIFEAKKGITNIQIDSIAYLIIYDTHKLRDVCKNNHGTRVIQIMLENMKCPVTKYVVLYMMKPIIDELMKNINGGYVIVQCVKVFPPTLKKVILDELAKYCVEIATHKIGCSVLQTCIKDSEILAMGLITPIISNAMLLAEDCYGNYVVQFVIKMKFPLVNERMIGELCGKFVRLSMNKHASNVVEDLMRCSNQDDVNAIVEDLIRSTDFLNVIQDPYGNYVAQRALKCTKGYLRRKLSFTIRSYRNDLQNHPHGKLVLDNAKSSKR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03414 331 ProSiteProfiles Pumilio RNA-binding repeat profile. 195 230 IPR001313 GO:0003723
Vifa2g03414 331 ProSiteProfiles Pumilio RNA-binding repeat profile. 231 266 IPR001313 GO:0003723
Vifa2g03414 331 ProSiteProfiles Pumilio RNA-binding repeat profile. 45 80 IPR001313 GO:0003723
Vifa2g03414 331 Pfam Pumilio-family RNA binding repeat 203 217 IPR001313 GO:0003723
Vifa2g03414 331 Pfam Pumilio-family RNA binding repeat 236 268 IPR001313 GO:0003723
Vifa2g03414 331 Pfam Pumilio-family RNA binding repeat 51 68 IPR001313 GO:0003723
Vifa2g03414 331 Pfam Pumilio-family RNA binding repeat 94 112 IPR001313 GO:0003723
Vifa2g03414 331 Pfam Pumilio-family RNA binding repeat 164 183 IPR001313 GO:0003723
Vifa2g03414 331 Pfam Pumilio-family RNA binding repeat 276 294 IPR001313 GO:0003723
Vifa2g03414 331 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 1 330 IPR033133 GO:0003723
Vifa2g03414 331 SMART pum_5 160 194 IPR001313 GO:0003723
Vifa2g03414 331 SMART pum_5 269 305 IPR001313 GO:0003723
Vifa2g03414 331 SMART pum_5 87 123 IPR001313 GO:0003723
Vifa2g03414 331 SMART pum_5 124 159 IPR001313 GO:0003723
Vifa2g03414 331 SMART pum_5 231 266 IPR001313 GO:0003723
Vifa2g03414 331 SMART pum_5 45 80 IPR001313 GO:0003723
Vifa2g03414 331 SMART pum_5 195 230 IPR001313 GO:0003723
Vifa2g03414 331 SUPERFAMILY ARM repeat 30 325 IPR016024 -
Vifa2g03414 331 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 30 295 - -
Vifa2g03414 331 Gene3D - 28 330 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03414 Vifa-Chr2 984865476 984867167 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03414 - - psat:127096275 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03414 2 984865476 984867167 Vifa2g03414 2 984865476 984867167 ECH
Vifa1g00480 1 79032905 79035998 Vifa2g03414 2 984865476 984867167 PCT