Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00480 ATGAACAACACACATGATCAATGGTTCTTGATGAAAAACAACACTGATCCTCCTATTAACACTGTTCCATTGCTCCAACAACAACATCAATCTTCTCGAATGTTGTCCAATGTTGTTCATCAATCTTCTTCTCCATCAAATGGGTTTACTTCATGTCGCGATGAAATCTTGATCAACAACAACAACAACAGCTGGAATATGAATGGTCATCGTGATCATCATCATGATCGTGATTATCATCAATTGTCTCTTAATCTTTCTTCCATGTCCCTTTCAGATGAAGATCATCATCAACCTAACAACAACAATGTTGCAAGAATCCGAGGTAATAATGTTGTTGACTCAAACTCAAACATCAACATCAACAACATGCCTGGTTTTCATGAAACTCATGCATACAACAACAACAACAACATTGTTGAAGATGAAACACTGACAGCAACAAACCCGACAACTTACCCACGTTATCATCAAAACATGGGTAGTCCTAAATCACTTTTTGGGGTTTCATCACTCTCTGATATGAAATGGGGTATACAAAAAGGTAACACCTTTGCTGGAGTATCTCAAATGGGTTCTTCTATTGATCATGGAAATGGAATTGGAAACACTCTTTCTTATGGTCATTTTTATGGACATGGTAGAGGTAGGGTTGTTCCGGTTCAGCTGCAAAACTCATCTTATAACAACCTTTATGAACAACAACAACAACAACGCCTTGTGTGTCCTTCACCAACAAGGTCTTCTTTTGCAATGGAGAATGATTTTCCAGCAAATCCTATCATGTACACTACTCAAAATGTTGTTAACAATGCTCCTCCATCACCACTTTATTATCCTTCTAATAGCCATTTTCAGCTTCCTCAATCTCCTTATCCTACTAGGCCTATTGAGGAACCATTGGCTTTTAAATGTGATAATAGTTTCATTCTTCAAGAGAATGACATGAGAAGAGACTGGAATTCATTCTTGGGTGGTGCTGGTGCTGGTGCTGGTGCTCGAGTGATTCCTCAAATTTCTCATAATTTTCCTATCAGAACTGAAAACACTCGGGCTTTCGTAACAGATGATGATGTACAAGTACAACAACCTTTGATGAACTTTCTTTCTTCAAATATGCCTTTGCCTGCGCTCCAAAGTTACATGATTCATACGGCAAAGGATCAGAATGGTGGTCGTCAGCTGCAGAAGTTGGTTGAGGAAGGGTCTAACGAGGATAAGGAAATGGTGTTTGAAGGTGTTATTGATAACATTGTTGAGCTTATGATGGATCCTTTTGGGAACTATCTTGTTCAGAAGTTGCTGGAGTTTTGTAGGGAAGATCAAAGGTTGCAGATTGTTCATATGTTGACTAAGGAACCTGGTCAGCTAGTCAGGACATCCTTAAACACACATGGAACAAGAGTGGTCCAGGTGCTGATTTCTACTATCAAGTCAAGGAGGCAAATTGCCTTAGTGAGAGCAGCAATTCAACCTGCTTTTCTTGAGCTTGTTAAGGATCTGAACGGAAACCATGTCATACAACGTTGTTTGACATGCTTTAGTGTTCAAGATAATGAGTTTATTTTTGATGCTGCAACAAAATTCTGTCTTGATGTTTCTACTCATCAACATGGCTGCTGTGTGCTTCAAAGGTGCATTGATTATTCGAAAGGGAAGAGTCAAGAAAGGCTTGTCAGGGAAATCTGCAAGCATGGCTTTCATCTTGCTCAAGATCCATATGGAAACTATGTTGTTCAGTATATCATTCAGATGCAGATTCCAAGTGCTATAGCTAAGTTTACTGCTCAATTCAGAGGAAACTATGTTACCCTCTCTACTCAAAAATTCAGCAGCCATGTGGTTGAAAAGTGCCTCAAATACATTCCAGAGACTAGAGCAAGGATTGTTCAAGAATTGTTGTCTGTTCCCCGCTTCGAGTGTCTGCTTCAAGATCCATATGGAAACTATGTCCTTCAGTGCGCCCTTGACAATACCAAGGGCTCCTTGCTTACATCTTTGGTTGATGCAGTCAGAGCGCACAAGAACTTGCGCACAAGCCCCTACTGCAAGAGGACATTCTCAAAAATCCAGCTGAAGAAGTGA 2085 0.3995 MNNTHDQWFLMKNNTDPPINTVPLLQQQHQSSRMLSNVVHQSSSPSNGFTSCRDEILINNNNNSWNMNGHRDHHHDRDYHQLSLNLSSMSLSDEDHHQPNNNNVARIRGNNVVDSNSNININNMPGFHETHAYNNNNNIVEDETLTATNPTTYPRYHQNMGSPKSLFGVSSLSDMKWGIQKGNTFAGVSQMGSSIDHGNGIGNTLSYGHFYGHGRGRVVPVQLQNSSYNNLYEQQQQQRLVCPSPTRSSFAMENDFPANPIMYTTQNVVNNAPPSPLYYPSNSHFQLPQSPYPTRPIEEPLAFKCDNSFILQENDMRRDWNSFLGGAGAGAGARVIPQISHNFPIRTENTRAFVTDDDVQVQQPLMNFLSSNMPLPALQSYMIHTAKDQNGGRQLQKLVEEGSNEDKEMVFEGVIDNIVELMMDPFGNYLVQKLLEFCREDQRLQIVHMLTKEPGQLVRTSLNTHGTRVVQVLISTIKSRRQIALVRAAIQPAFLELVKDLNGNHVIQRCLTCFSVQDNEFIFDAATKFCLDVSTHQHGCCVLQRCIDYSKGKSQERLVREICKHGFHLAQDPYGNYVVQYIIQMQIPSAIAKFTAQFRGNYVTLSTQKFSSHVVEKCLKYIPETRARIVQELLSVPRFECLLQDPYGNYVLQCALDNTKGSLLTSLVDAVRAHKNLRTSPYCKRTFSKIQLKK 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00480 694 ProSiteProfiles Pumilio RNA-binding repeat profile. 525 560 IPR001313 GO:0003723
Vifa1g00480 694 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 53 690 - -
Vifa1g00480 694 FunFam Pumilio homolog 9 368 694 - -
Vifa1g00480 694 ProSiteProfiles Pumilio RNA-binding repeat profile. 377 412 IPR001313 GO:0003723
Vifa1g00480 694 CDD Pumilio 386 690 IPR033712 GO:0003723
Vifa1g00480 694 Gene3D - 362 693 IPR011989 -
Vifa1g00480 694 ProSiteProfiles Pumilio RNA-binding repeat profile. 561 596 IPR001313 GO:0003723
Vifa1g00480 694 Pfam Pumilio-family RNA binding repeat 530 563 IPR001313 GO:0003723
Vifa1g00480 694 Pfam Pumilio-family RNA binding repeat 384 412 IPR001313 GO:0003723
Vifa1g00480 694 Pfam Pumilio-family RNA binding repeat 567 583 IPR001313 GO:0003723
Vifa1g00480 694 Pfam Pumilio-family RNA binding repeat 494 524 IPR001313 GO:0003723
Vifa1g00480 694 Pfam Pumilio-family RNA binding repeat 417 450 IPR001313 GO:0003723
Vifa1g00480 694 Pfam Pumilio-family RNA binding repeat 644 669 IPR001313 GO:0003723
Vifa1g00480 694 Pfam Pumilio-family RNA binding repeat 601 634 IPR001313 GO:0003723
Vifa1g00480 694 Pfam Pumilio-family RNA binding repeat 457 471 IPR001313 GO:0003723
Vifa1g00480 694 ProSiteProfiles Pumilio RNA-binding repeat profile. 489 524 IPR001313 GO:0003723
Vifa1g00480 694 ProSiteProfiles Pumilio RNA-binding repeat profile. 413 448 IPR001313 GO:0003723
Vifa1g00480 694 ProSiteProfiles Pumilio RNA-binding repeat profile. 597 635 IPR001313 GO:0003723
Vifa1g00480 694 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 345 694 IPR033133 GO:0003723
Vifa1g00480 694 SMART pum_5 489 524 IPR001313 GO:0003723
Vifa1g00480 694 SMART pum_5 561 596 IPR001313 GO:0003723
Vifa1g00480 694 SMART pum_5 377 412 IPR001313 GO:0003723
Vifa1g00480 694 SMART pum_5 597 631 IPR001313 GO:0003723
Vifa1g00480 694 SMART pum_5 525 560 IPR001313 GO:0003723
Vifa1g00480 694 SMART pum_5 413 448 IPR001313 GO:0003723
Vifa1g00480 694 SMART pum_5 452 487 IPR001313 GO:0003723
Vifa1g00480 694 SMART pum_5 634 669 IPR001313 GO:0003723
Vifa1g00480 694 SUPERFAMILY ARM repeat 376 691 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00480 Vifa-Chr1 79032905 79035998 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00480 - - psat:127118782 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00480 1 79032905 79035998 Vifa1g00480 1 79032905 79035998 ECH
Vifa1g00480 1 79032905 79035998 Vifa2g03414 2 984865476 984867167 PCT