Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03248 ATGACAATGGAGGAGAAGGAAGAACACTCTACAGAAGCTGCAGTTACTTCACACAATGACTCCAAATTGTTCGACGATGACGACCGTGTTAAACGAACAGGAACGGTTTGGACAACAAGTTCGCATATAATAACAGCAGTAGTAGGATCAGGAGTGTTGTCGTTGGCATGGGCGATAGCTCAATTGGGTTGGATAATTGGTTTATCAGTCATGATTTTCTTCAGTCTCATCACTTGGTATACTTCATCACTCCTATCCGAATGTTATCGAACAGGAGATCCTCATTTCGGGAAAAGAAACTATACTTTCATGGAAGCTGTTCACACCATTCTCGGGGGTTTCTATGACACCCTTTGTGGGATAGTTCAGTACAGCAATCTTTATGGAACTGCAGTAGGATACACAATTGGTGCTTCCATTAGTATGATGGCAATAAAAAGGTCTAACTGTTTCCATTCCTCGGGAGGAAAAGATGGATGTCGCATTTCAAGCAATCCATACATGATCAGTTTTGGAGTAATCCAAATTTTCTTTTCTCAAATTCCAGATTTTCATGAAATGTGGTGGCTCTCAATTGTTGCAGCAATCATGTCTTTCACCTATTCATTAATTGGCCTTGGTCTCGCAATTGCCAAAGTTGCAGAAAATGGTTCCTTCAAAGGTAGTATCACAGGAGTAAGCATTGGAACTGTGACAGAAGCCCAAAAAGTATGGGGAGTTTTCCAATCTCTTGGCAACATAGCTTTCGCGTATTCATATTCACAAATTCTCATTGAAATTCAGGATACCATAAAAAGTCCACCTTCCGAGATGAAAACGATGAAGCAAGCCACAAAGATAAGTATAGGCGTGACAACGATATTTTACATGCTTTGCGGCGGTATGGGCTATGCTGCATTTGGAGACTTGTCACCAGGAAACTTACTCACTGGATTTGGTTTCTATAATCCATATTGGCTCATTGATATTGCTAACGCCGCTCTCATAATTCATCTTGTGGGAGCATACCAAGTTTACGCGCAACCCTTATTTGCTTTCGTCGAGAAAATAATGATAAAAAGATGGCCTAAAATAAAAAAGGAATACAAACTTACAATTCCTGGTTTTCGTCCTTACCATCTAAATCTATTTAGATTAATTTGGAGGACTATATTTGTGATCACAACAACATTTATATCAATGTTGATTCCTTTCTTCAATGATGTTTTGGGATTAATTGGAGCAGCTGGATTTTGGCCTTTAACAGTTTATTTTCCAGTGGAGATGTATATCAAACAGAAGAAGATCACAAAATGGAGTTATAAATGGATTAGTATGCAAACTTTAAGTGTTATATGTTTTGTAGTATCAGTTGTGGCTTTTGTTGGATCAGTGTCAAGTATTGTGGTTGATCTTAAGAAATACAAACCATTCACAACTGATTATTGA 1428 0.3831 MTMEEKEEHSTEAAVTSHNDSKLFDDDDRVKRTGTVWTTSSHIITAVVGSGVLSLAWAIAQLGWIIGLSVMIFFSLITWYTSSLLSECYRTGDPHFGKRNYTFMEAVHTILGGFYDTLCGIVQYSNLYGTAVGYTIGASISMMAIKRSNCFHSSGGKDGCRISSNPYMISFGVIQIFFSQIPDFHEMWWLSIVAAIMSFTYSLIGLGLAIAKVAENGSFKGSITGVSIGTVTEAQKVWGVFQSLGNIAFAYSYSQILIEIQDTIKSPPSEMKTMKQATKISIGVTTIFYMLCGGMGYAAFGDLSPGNLLTGFGFYNPYWLIDIANAALIIHLVGAYQVYAQPLFAFVEKIMIKRWPKIKKEYKLTIPGFRPYHLNLFRLIWRTIFVITTTFISMLIPFFNDVLGLIGAAGFWPLTVYFPVEMYIKQKKITKWSYKWISMQTLSVICFVVSVVAFVGSVSSIVVDLKKYKPFTTDY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03248 475 PANTHER OS05G0424000 PROTEIN-RELATED 27 458 - -
Vifa2g03248 475 Pfam Transmembrane amino acid transporter protein 32 461 IPR013057 -
Vifa2g03248 475 FunFam Amino acid permease 6 29 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03248 Vifa-Chr2 930556864 930559167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03248 22 475 Organic Solute Cotransporters AT5G09220 69.651 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03248 K24917 - gmx:100816507 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03248 2 930556864 930559167 Vifa3g04055 3 1195350486 1195351643 PCT