Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00975 ATGGGAAGAACATTTTCAAAGACTCAAATTTACGCAATGCAAGAAAACCAACAACAACTACCTTGCATTTCTTGCACCACCTTCAACATTCTTGCTCCTATATACAAACGTCTTAACCATGAGCAGGATCAGAGTTGTCGTGAAAGTGAGTATAGAGGATGTTGGTTGGGTAGGAATAATAGGATTTTGGATTGGTTGTTGTTTGAGAGATCTTCCATTATTTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGTTTGTTAATTTGTATGAGAAGAGACTAGGTGATGCTGGTTATATTCATTTTAAGCTCGGAAGGACTAACAACCGTGGTGATGGTCTTCTGATAGCAGTGAAAAAGGAATATTTCAAAGTTATAAATTATAAGGAGTTGCATTTCAATGATTGTGGTGATCGAGTAGCTCAACTGTTACATGTTGAGTTAGCTTTTCCACTTTCACAATGTCGAAACAATGGTGTTAGACAAGAGATTCTTATTGTCAATACTCACCTACTATTTCCTCATGATTCAAGTCTATGCCTTGTGCGGCTTCATCAGGTTTACAAGATACTTCAATATGTGGAATCTTATAAGAATGAATACCAACTTAAGCCTTTATCGATTATATTATGCGGTGATTGGAACGGAAGCAAACGTGGACATGTTTATATGTTCCTAAGGTCTCAAGGATTTGTATCATCCTATGATACAGCACATCACTATACTGATGCAGATGCTCACAAGTGGATCAGCCACCGCAACCATCTTGGAAATACATGTGCTGTTGATTTCATATGGCTTCTGAATCCTGATAAATATCAAAAACTCGTAAAATCGAGCTGGAGTGAAGCAGTTTTTGGCATGTTCAAGTATCTATTGCAAAGAACTTCAATGACAGAGAGTGCTGCATTTGATTTCCTAAAGGATGAAAATGAAGATTGTATTACATATGCTGGTTTTAGAAAAGCACTTCAACAGCTTAACTTGATTGGTCATTGTTATGGTTTGAGTGATGAAGCGACAAAGGACTTGTGGTTTCAAGCGGATATAGATGGAAATGGTGTAATTGATTATAAACAATTTCTGTACCAAATATGGAATCCAACAGGGTCAGATTATCGAAGAGACGACAACAAGAACGATAAGCAAGATGATGAACCAAACGATGGTGAAGAAGAGGAAACAATTGGTTTTAGTATTAAAAATGCAGTGTTGTTCCCTCAAGAGATGGAGAAAGGTAGTTGGCCAGAAGACTATTCCCTTTCTGATCATGCGAGACTAACGGTAGTCTTCACACCTATAAGAATTTCTTACTCTCACAAGACTTCTTGA 1332 0.3731 MGRTFSKTQIYAMQENQQQLPCISCTTFNILAPIYKRLNHEQDQSCRESEYRGCWLGRNNRILDWLLFERSSIICLQEFWVGNEEFVNLYEKRLGDAGYIHFKLGRTNNRGDGLLIAVKKEYFKVINYKELHFNDCGDRVAQLLHVELAFPLSQCRNNGVRQEILIVNTHLLFPHDSSLCLVRLHQVYKILQYVESYKNEYQLKPLSIILCGDWNGSKRGHVYMFLRSQGFVSSYDTAHHYTDADAHKWISHRNHLGNTCAVDFIWLLNPDKYQKLVKSSWSEAVFGMFKYLLQRTSMTESAAFDFLKDENEDCITYAGFRKALQQLNLIGHCYGLSDEATKDLWFQADIDGNGVIDYKQFLYQIWNPTGSDYRRDDNKNDKQDDEPNDGEEEETIGFSIKNAVLFPQEMEKGSWPEDYSLSDHARLTVVFTPIRISYSHKTS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00975 443 Gene3D - 305 365 - -
Vifa1g00975 443 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 13 432 - -
Vifa1g00975 443 SUPERFAMILY EF-hand 280 363 IPR011992 -
Vifa1g00975 443 MobiDBLite consensus disorder prediction 373 394 - -
Vifa1g00975 443 FunFam Putative calcium-binding protein 7 435 - -
Vifa1g00975 443 Pfam Endonuclease/Exonuclease/phosphatase family 27 234 IPR005135 GO:0003824
Vifa1g00975 443 Gene3D Endonuclease/exonuclease/phosphatase 3 304 IPR036691 -
Vifa1g00975 443 SUPERFAMILY DNase I-like 22 240 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00975 Vifa-Chr1 163855059 163857981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00975 1 330 EF-hand Containing Proteins AT5G54130 71.257 2.80e-174 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00975 - - mtr:11410878 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00975 1 163855059 163857981 Vifa2g02973 2 848712933 848715396 PCT