Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02527 ATGAAGTGTTTATCCATCTCTCTCTGCATTCTTCTTTCTCTGTTCTCTTTTCAATGTGTATCATCTAGAAATGTATCTGAGAGTGACATACAACAAGCTAGCATCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACTATTTCTGAACAAGAATTCCTACAAAATGCCGAAATTATTTCTCAACTTCTTCATCGTCATGGATACGAGTATGTTGTGGTGGATTATCTCTGGTATAGAAGAAAAGTTGAGGGGGCTTTTCATGATTCTCTTGGGTTTGATGTGATTGATAAATGGGGGAGGGTGATTCCTGACCCAGGAAGATGGCCTTCTTCGAGTGACGGGAAAGGGTTTAGCCAGGTGGCGAATCGAGTGCATAGCTTGGGTTTGAAGTTCGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACGCCTATTCTAGATACAAGGACGGGACGGGCTTATCAAGAATCTGGTCGACTGTGGTATGCAAAAGATATAGCAATCCGTGAAAGGGCTTGCGCATGGATGCCTCATGGTTTCATGAGTGTAAATACAAATTTGGGCGCTGGCAAAGCTTTTTTGAGGTCCCTTTATCAGCAGTATGCTTCATGGAATGTTGATTTTGTGAAACATGACTGTGTATTTGGCGATGACTTGGATTTAAATGAAATAAGCTATGTATCAGAGGTTCTCCGGGAGCTTGATCGCCCCATTGTCTATTCATTGTCTCCTGGAGCCAAAGTTACACCAGCCATGGCCAAGGGTGTCAGTGGACTGGTCAATTTGTATCGCATAACGGGGGATGACTGGGATGCATGGGGGGATGTCAAATCTCATTTTGATGTATCAAGAGATTTTGCAGCTGCGCATATGATAGGGGCAAAAAGTTTAATGGGGAACTCATGGCCGGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCTACTAGTTGTCAGACGTCAAATACAGGTCCACGTAGGTATAGTAACCTCAACCTAGAAGAGAAGCGGACACAGATGACCTTATGGGCAATGGCGAAGTCTCCCCTTATGTATGGGGGCGATGTACGGAAGATTGATCCCACAACATATGGTCTTATCACAAATCCCACCCTGCTGGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTCCTTATATTGCAAGCTTGAAGAATGAAGATCAGGATTCTGAAAAGCAAAAGAGAAGAAGCTATAGAGAAACAAAAGGATCATATACACATTCATTAGGCCTCACTAGCTGCTCTGAGTCAAAGGCAAGTGGTTGGACTAGTGAGAGTATTAGTCAATATCCTGAAAGAATCTGTTGGAAAAGGAATTTAGGAAACAAGCATCTTGCCCCCTTCTGCATGCACAAGAGGGAAATGAACTTTGCATTAGATGAAGAGAATATATATCAAGATTATCATCATTTAGTTGCACTGGACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACAAAACCTTACTTCCAAAGAGTTCAAGAGAAGTACATTTTCATCCTGCAGGTGGGATGCAAATCAGATGTGGCGGTTGAATCGTAATGGGACCTTGGTAAATAGCTATTCAGGCTTATGTGCAACAGTAGAGCCTGTTAAAGCTACTGTTAATTCTGGTGGTTTTCGCGCTTGGGTAGCAACCGGAAGAACAGGAGAAGTGTATGTTGCTTTCTTCAATCTAAGTGAACAGAAGGCAGTTATATCTGTACATACATCAAACTTATTTAAGGTTTTGGTTGGGAGACACTTAAGTTTTTGTAAAGGCAGGGAAGTGTGGAGTGGAAGAGACATTGTAATAACGCAAGGGGTGTTATCAGCGGAAGTGGAAATGCATGGAACTGCACTATTTGTTCTCAATTGTAACTAG 1917 0.4199 MKCLSISLCILLSLFSFQCVSSRNVSESDIQQASIPPRGWNSYDSFCWTISEQEFLQNAEIISQLLHRHGYEYVVVDYLWYRRKVEGAFHDSLGFDVIDKWGRVIPDPGRWPSSSDGKGFSQVANRVHSLGLKFGIHVMRGISTQAVNANTPILDTRTGRAYQESGRLWYAKDIAIRERACAWMPHGFMSVNTNLGAGKAFLRSLYQQYASWNVDFVKHDCVFGDDLDLNEISYVSEVLRELDRPIVYSLSPGAKVTPAMAKGVSGLVNLYRITGDDWDAWGDVKSHFDVSRDFAAAHMIGAKSLMGNSWPDLDMLPFGWLTDPTSCQTSNTGPRRYSNLNLEEKRTQMTLWAMAKSPLMYGGDVRKIDPTTYGLITNPTLLEINSFSSNNMEFPYIASLKNEDQDSEKQKRRSYRETKGSYTHSLGLTSCSESKASGWTSESISQYPERICWKRNLGNKHLAPFCMHKREMNFALDEENIYQDYHHLVALDRIKFCLDASPKQNLTSKEFKRSTFSSCRWDANQMWRLNRNGTLVNSYSGLCATVEPVKATVNSGGFRAWVATGRTGEVYVAFFNLSEQKAVISVHTSNLFKVLVGRHLSFCKGREVWSGRDIVITQGVLSAEVEMHGTALFVLNCN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02527 638 Pfam Alpha galactosidase C-terminal beta sandwich domain 556 635 IPR041233 -
Vifa2g02527 638 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 7 637 IPR002241 GO:0004553|GO:0005975
Vifa2g02527 638 Gene3D Aldolase class I 13 387 IPR013785 -
Vifa2g02527 638 SUPERFAMILY (Trans)glycosidases 33 385 IPR017853 -
Vifa2g02527 638 SUPERFAMILY Ricin B-like lectins 495 559 IPR035992 -
Vifa2g02527 638 PRINTS Glycosyl hydrolase family 27 signature 343 364 IPR002241 GO:0004553|GO:0005975
Vifa2g02527 638 PRINTS Glycosyl hydrolase family 27 signature 124 145 IPR002241 GO:0004553|GO:0005975
Vifa2g02527 638 PRINTS Glycosyl hydrolase family 27 signature 30 49 IPR002241 GO:0004553|GO:0005975
Vifa2g02527 638 SUPERFAMILY Glycosyl hydrolase domain 552 636 - -
Vifa2g02527 638 Pfam Alpha galactosidase A 206 385 IPR002241 GO:0004553|GO:0005975
Vifa2g02527 638 CDD GH27 36 385 IPR002241 GO:0004553|GO:0005975
Vifa2g02527 638 Gene3D - 550 637 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02527 Vifa-Chr2 666900032 666904096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02527 2 475 Glycoside Hydrolase AT3G26380 62.605 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02527 - - gmx:100777954 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02526 2 666900032 666904096 Vifa2g02527 2 666900032 666904096 PCT