Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02526 ATGAAGTGTTTATCCATCTCTCTCTGCATTCTTCTTTCTCTGTTCTCTTTTCAATGTGTATCATCTAGAAATGTATCTGAGAGTGACATACAACAAGCTAGCATCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACTATTTCTGAACAAGAATTCCTACAAAATGCCGAAATTATTTCTCAACTTCTTCATCGTCATGGATACGAGTATGTTGTGGTGGATTATCTCTGGTATAGAAGAAAAGTTGAGGGGGCTTTTCATGATTCTCTTGGGTTTGATGTGATTGATAAATGGGGGAGGGTGATTCCTGACCCAGGAAGATGGCCTTCTTCGAGTGACGGGAAAGGGTTTAGCCAGGTGGCGAATCGAGTGCATAGCTTGGGTTTGAAGTTCGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACGCCTATTCTAGATACAAGGACGGGACGGGCTTATCAAGAATCTGGTCGACTGTGGTATGCAAAAGATATAGCAATCCGTGAAAGGGCTTGCGCATGGATGCCTCATGGTTTCATGAGTGTAAATACAAATTTGGGCGCTGGCAAAGCTTTTTTGAGGTCCCTTTATCAGCAGTATGCTTCATGGAATGTTGATTTTGTGAAACATGACTGTGTATTTGGCGATGACTTGGATTTAAATGAAATAAGCTATGTATCAGAGGTTCTCCGGGAGCTTGATCGCCCCATTGTCTATTCATTGTCTCCTGGAGCCAAAGTTACACCAGCCATGGCCAAGGGTGTCAGTGGACTGGTCAATTTGTATCGCATAACGGGGGATGACTGGGATGCATGGGGGGATGTCAAATCTCATTTTGATGTATCAAGAGATTTTGCAGCTGCGCATATGATAGGGGCAAAAAGTTTAATGGGGAACTCATGGCCGGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCTACTAGTTGTCAGAGTCCACGTAGGTATAGTAACCTCAACCTAGAAGAGAAGCGGACACAGATGACCTTATGGGCAATGGCGAAGTCTCCCCTTATGTATGGGGGCGATGTACGGAAGATTGATCCCACAACATATGGTCTTATCACAAATCCCACCCTGCTGGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTCCTTATATTGCAAGCTTGAAGAATGAAGATCAGGATTCTGAAAAGCAAAAGAGAAGAAGCTATAGAGAAACAAAAGGATCATATACACATTCATTAGGCCTCACTAGCTGCTCTGAGTCAAAGGCAAGTGGTTGGACTAGTGAGAGTATTAGTCAATATCCTGAAAGAATCTGTTGGAAAAGGAATTTAGGAAACAAGCATCTTGCCCCCTTCTGCATGCACAAGAGGGAAATGAACTTTGCATTAGATGAAGAGAATATATATCAAGATTATCATCATTTAGTTGCACTGGACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACAAAACCTTACTTCCAAAGAGTTCAAGAGAAGTACATTTTCATCCTGCAGGTGGGATGCAAATCAGATGTGGCGGTTGAATCGTAATGGGACCTTGGTAAATAGCTATTCAGGCTTATGTGCAACAGTAGAGCCTGTTAAAGCTACTGTTAATTCTGGTGGTTTTCGCGCTTGGGTAGCAACCGGAAGAACAGGAGAAGTGTATGTTGCTTTCTTCAATCTAAGTGAACAGAAGGCAGTTATATCTGTACATACATCAAACTTATTTAAGGTTTTGGTTGGGAGACACTTAAGTTTTTGTAAAGGCAGGGAAGTGTGGAGTGGAAGAGACATTGTAATAACGCAAGGGGTGTTATCAGCGGAAGTGGAAATGCATGGAACTGCACTATTTGTTCTCAATTGTAACTAG 1905 0.4199 MKCLSISLCILLSLFSFQCVSSRNVSESDIQQASIPPRGWNSYDSFCWTISEQEFLQNAEIISQLLHRHGYEYVVVDYLWYRRKVEGAFHDSLGFDVIDKWGRVIPDPGRWPSSSDGKGFSQVANRVHSLGLKFGIHVMRGISTQAVNANTPILDTRTGRAYQESGRLWYAKDIAIRERACAWMPHGFMSVNTNLGAGKAFLRSLYQQYASWNVDFVKHDCVFGDDLDLNEISYVSEVLRELDRPIVYSLSPGAKVTPAMAKGVSGLVNLYRITGDDWDAWGDVKSHFDVSRDFAAAHMIGAKSLMGNSWPDLDMLPFGWLTDPTSCQSPRRYSNLNLEEKRTQMTLWAMAKSPLMYGGDVRKIDPTTYGLITNPTLLEINSFSSNNMEFPYIASLKNEDQDSEKQKRRSYRETKGSYTHSLGLTSCSESKASGWTSESISQYPERICWKRNLGNKHLAPFCMHKREMNFALDEENIYQDYHHLVALDRIKFCLDASPKQNLTSKEFKRSTFSSCRWDANQMWRLNRNGTLVNSYSGLCATVEPVKATVNSGGFRAWVATGRTGEVYVAFFNLSEQKAVISVHTSNLFKVLVGRHLSFCKGREVWSGRDIVITQGVLSAEVEMHGTALFVLNCN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02526 634 CDD GH27 36 381 IPR002241 GO:0004553|GO:0005975
Vifa2g02526 634 SUPERFAMILY (Trans)glycosidases 33 381 IPR017853 -
Vifa2g02526 634 Gene3D Aldolase class I 13 383 IPR013785 -
Vifa2g02526 634 Pfam Alpha galactosidase A 206 381 IPR002241 GO:0004553|GO:0005975
Vifa2g02526 634 SUPERFAMILY Ricin B-like lectins 491 555 IPR035992 -
Vifa2g02526 634 Gene3D - 546 633 IPR013780 -
Vifa2g02526 634 SUPERFAMILY Glycosyl hydrolase domain 548 632 - -
Vifa2g02526 634 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 7 633 IPR002241 GO:0004553|GO:0005975
Vifa2g02526 634 Pfam Alpha galactosidase C-terminal beta sandwich domain 552 631 IPR041233 -
Vifa2g02526 634 PRINTS Glycosyl hydrolase family 27 signature 339 360 IPR002241 GO:0004553|GO:0005975
Vifa2g02526 634 PRINTS Glycosyl hydrolase family 27 signature 30 49 IPR002241 GO:0004553|GO:0005975
Vifa2g02526 634 PRINTS Glycosyl hydrolase family 27 signature 124 145 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02526 Vifa-Chr2 666900032 666904096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02526 2 471 Glycoside Hydrolase AT3G26380 62.500 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02526 - - gmx:100777954 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02526 2 666900032 666904096 Vifa2g02526 2 666900032 666904096 ECH
Vifa2g02526 2 666900032 666904096 Vifa2g02527 2 666900032 666904096 PCT