Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02137 ATGAACAAAGTATTGTCTCAGTGTCTAACGACGCCGTTTAAATTCTCACTCTCTTCTCTCTATATCTCTCATCATCATCATCATCACGCACCTCGCTCCTTTCTTCGTCGCTTCTCTCTTGGCGCTACTTCTATCAGAGCGATGACATCCCATATTGTTGGTTATCCCCGCATGGGACCAAAGAGGGAACTTAAATTTGCCCTTGAATCATTTTGGGATGGAAAGACTAGTGCCGACGAACTGAAGCAGGTTGCTGCAAACCTTAGGTCATCCATCTGGAAGCAGATGGCCGATGCTGGAATTCAGCATATTCCAAGCAACACCTTCTCATACTATGATCAAGTATTGGACACTACAGCCATGCTCGGTGCAGTTCCCGACAGATATAATTGGAAAGGCGGAGAGATTGGCTTTGATGTTTACTTCTCCATGGCTAGAGGAAATGCGTCTGTGCCGGCTATGGAAATGACCAAGTGGTTTGACACCAACTACCATTTCATTGTTCCTGAATTAGGTCCAGATGTTAAGTTCTCCTACGCATCACACAAAGCGGTGGATGAATACAAGGAGGCCAAAGCTCTAGGAGTGAGTACTGTACCTGTACTTGTGGGGCCAGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGAGTTGAAAAATCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAAGGAAGTGGTGACTGAACTGAAGGCGGCTGGTGCTACTTGGATTCAATTTGATGAACCTACCCTTGTCAAGGATCTTGATGCTCACCAGTTACAAGCATTTGATTATGCTTATGCGGAGCTTGAATCTACTTTATCTGGTTTGGATGTTCTGATTGAGACATACTTTGCTGATGTCCCTGCTGAAGCCTACAAAACACTCACCTCTTTGAAGGCTGTTACTGCATATGGGTTTGACCTTGTTCGCGGAACAAAGACCCTTGATTTGATCAAGCAAGGATTTCCATCTGGAAAACTTCTTTTCGCTGGCATTGTTGATGGAAGAAATATTTGGGCTAATAATCTTGAAGCTTCACTAAACACCTTGCAGACCCTTGGGGACATTGTTGGAAAGGACAAAGTTGTGGTTTCCACATCCTGTTCTCTTCTTCACACTGCAGTTGATCTGGTGAATGAGACAAAGCTGGACCAAGAGATTAAGTCTTGGCTTGCTTTTGCAGCACAGAAAATAGTTGAAGTAAATGCCTTGGCCAGGGCATTGTCTGGACAAAAGGATGAGGCATACTTTTCTTCTAATGCTTTCGCTTTAGCTTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCTGCTGCTACTTTAAAGGGCTCTGATCACCGTAGGGTCACTAATGTCAGTTCCAGATTGGCCACACAACAGAAGAAATTGAATCTTCCTATTCTTCCAACCACTACAATTGGATCTTTCCCTCAGACCGCAGATCTTAGAAGGGTTCGCCGTGAGTTCAAGGCCAAAAAGATCTCCGAGGAGGATTATATCAATTTCATTAAAGAGGAAATTAACAATGTTGTTAAGATCCAGGAAGAGCTCGACATTGATGTCTTGGTGCATGGAGAGCCTGAGAGGAATGACATGGTTGAGTACTTCGGAGAACAATTATCTGGCTTTGCTTTCACTGCCAATGGGTGGGTGCAATCCTATGGATCCCGCTGTGTCAAACCCCCAATTATCTATGGTGATGTGAGCCGTCCCAAGCCAATGACTGTTTTTTGGTCTTCGACAGCTCAGAGTTTGACCAAACGACCTATGAAGGGAATGCTAACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAACCTAGATTTGAGACTTGCTACCAGATTGCTTTGGCTATAAAGGATGAGGTTGAGGATCTTGAGAAAGCTGGCATTACCGTCATCCAAATCGACGAGGCTGCTTTAAGAGAAGGTTTGCCTCTGAGGAAGTCTGAGGAGGCTTTCTATCTAAACTGGGCAGTTCATTCATTTAGGATTACAAACTGTGGTGTGCAAGACACTACCCAGATTCACACTCACATGTGTTACTCGAACTTCAACGACATCATTCACTCGATCATAGATATGGATGCAGATGTGATCACCATTGAGAATTCCCGATCAGATGAGAAGTTACTATCGGTCTTCCGTGAGGGAGTTAAATATGGTGCTGGTATTGGTCCTGGCGTTTATGATATTCACTCACCAAGAATTCCACCCACAGAAGAAATTGCTGACAGAATCAAGAAGATGCTTGCAGTCCTTGAAAGCAACATCCTCTGGGTCAACCCTGATTGTGGCCTTAAAACGCGAAAATACACTGAGGTTAAGCCCGCTCTCACCAACCTGGTTGATGCTGTCAAGCTCATCCGCAACCAACTAACTAGTACCAAGTGA 2439 0.4453 MNKVLSQCLTTPFKFSLSSLYISHHHHHHAPRSFLRRFSLGATSIRAMTSHIVGYPRMGPKRELKFALESFWDGKTSADELKQVAANLRSSIWKQMADAGIQHIPSNTFSYYDQVLDTTAMLGAVPDRYNWKGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVDEYKEAKALGVSTVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKILPVYKEVVTELKAAGATWIQFDEPTLVKDLDAHQLQAFDYAYAELESTLSGLDVLIETYFADVPAEAYKTLTSLKAVTAYGFDLVRGTKTLDLIKQGFPSGKLLFAGIVDGRNIWANNLEASLNTLQTLGDIVGKDKVVVSTSCSLLHTAVDLVNETKLDQEIKSWLAFAAQKIVEVNALARALSGQKDEAYFSSNAFALASRKSSPRVTNEAVQKAAATLKGSDHRRVTNVSSRLATQQKKLNLPILPTTTIGSFPQTADLRRVRREFKAKKISEEDYINFIKEEINNVVKIQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQSLTKRPMKGMLTGPVTILNWSFVRDDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEEAFYLNWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRIKKMLAVLESNILWVNPDCGLKTRKYTEVKPALTNLVDAVKLIRNQLTSTK 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02137 812 CDD CIMS_C_terminal_like 480 803 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vifa2g02137 812 Gene3D - 437 805 IPR038071 -
Vifa2g02137 812 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 48 807 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vifa2g02137 812 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 52 441 - -
Vifa2g02137 812 NCBIfam 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 53 807 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vifa2g02137 812 Pfam Cobalamin-independent synthase, Catalytic domain 479 802 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vifa2g02137 812 PIRSF Met_synth_MetE 47 812 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vifa2g02137 812 CDD CIMS_N_terminal_like 49 414 - -
Vifa2g02137 812 SUPERFAMILY UROD/MetE-like 444 807 IPR038071 -
Vifa2g02137 812 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 48 811 - -
Vifa2g02137 812 Gene3D - 52 572 IPR038071 -
Vifa2g02137 812 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 442 805 - -
Vifa2g02137 812 Pfam Cobalamin-independent synthase, N-terminal domain 50 362 IPR013215 GO:0003871|GO:0008270|GO:0008652
Vifa2g02137 812 SUPERFAMILY UROD/MetE-like 50 442 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02137 Vifa-Chr2 551356754 551360529 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02137 K00549 - gmx:100779947 1439.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07871 1 1228571949 1228575101 Vifa2g02137 2 551356754 551360529 PCT