Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07871 ATGGCATCACACATTGTTGGATATCCACGCATGGGCCCCAAGAGAGAGCTCAAGTTCGCTCTCGAGTCATTCTGGGATAAGAAGAGCAGCGCTGAGGATTTGGAGAAGGTGGCTGCTGATCTCAGGGCATCTATCTGGAAACAGATGGCTAGTGCTGGGATCAAGTACATCCCTAGCAACACTTTCGCATACTATGATCAGGTGCTCAATACCACCGCCATGCTCGGTGCCGTTCCACCAAGATACGGATGGACTGGCGGTGAGATTGGATTCGATACCTACTTCTCCATGGGCAGAGGTAATGCATCTGTGCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTACCACTTCATTGTCCCCGAATTGGGACCTGATATGAAGTTCACTTACGCTTCTCACAAGGCCGTCAACGAATACAAGGAAGCCAAGGCGCTCGGAGTAGATACAATTCCGGTCCTGGTTGGCCCAGTGACATACTTGCTGCTATCCAAGCCTGCCAACGGTGTTGATCCATCCTTTGATCTTCTTACTCTCCTCCCTAAAGTCATTGCTGTCTACAAGGAAGTTGTGGAGGATCTTAAGGCAGCTGGTGCTTCATGGATTCAATTCGACGAGCCTACCCTTGTCTTAGACCTCGAACCTCACAAGTTGCATGCATTTACTGCTGCATACTCAGATCTTGCATCCAGTTTATCCGGTTTAAATGTTCTCGTTGAGACCTACTTTGCCGACATTCCTGCTGACGCATACAAGACCCTCACTAGTCTGCCCGGTGTCACAGCATTCGGAGTGGATTTAGTCCGTGGAGGTAAGACTCTTGATTTGATCAAGGGTGGATTCCCTAGTGGAAAATACTTGTTCGCTGGAGTCGTTGACGGAAGGAACATTTGGGCTAACGATCTTACTGCTTCTCTGATTACATTAAACGGGCTCGAGAACACCGTCGGAAAAGATAAACTAGTTGTGTCAACCTCTTGTTCACTTCTCCACACCGCTGTTGATCTTGTTAACGAGACCAAGTTGGATAACGAGATCAAATCATGGCTAGCTTTTGCTGCCCAAAAAGTTGTTGAAGTAAATGCATTGGCCAATGCATTGGCCGGTCAAAAAGACGATGCCTTCTTCTCTTCTAATTCCTCCGCTCTGGCTTCAAGAAAGAACTCTCCGAGAGTGACTAACGAGGGTGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCTGACCATCGCCGTGCCACAAACGTCGGCACCAGACTCGACGCACAACAAAAGAAGCTCAACCTTCCTGTCCTTCCAACCACTACCATTGGATCCTTCCCTCAGACCCCTGAGTTGAGAAGGGTGCGACGTGAATACAAGGCTAACAAGATCTCAGAGGAAGAGTATGTTAAAGAAATTAAAGAGGAAATCCGTAAAGTCGTTGAACTCCAAGAACAGCTTGATATTGACGTCCTTGTACACGGAGAGCCTGAGAGAAATGATATGGTTGAGTACTTTGGCGAGCAGTTGTCAGGCTTTGCCTTCACTGTTAATGGTTGGGTGCAATCTTATGGATCTCGCTGCGTGAAGCCACCGATCATCTACGGTGACGTGAGCCGTCCAAAACCAATGACTGTCTTCTGGTCATCTACTGCTCAGAGCATGACCAAGCGTCCAATGAAGGGAATGCTTACCGGTCCCGTCACCATTCTCAACTGGTCCTTTGTTCGAAATGACCAGCCTAGATCCGAGACTTGCTATCAGATTGCTTTGGCTATCAAGGATGAAGTCGAAGACCTTGAAAAAGCCGGTATTACTGTTATCCAAATCGACGAGGCTGCTTTGAGAGAAGGGCTACCATTGAGGAAATCAGCACAAGCTCAATACTTGGATTGGGCTGTCCATTCCTTCAGGATCACCAATGTTGGTGTGCAGGATACTACTCAAATCCATACACACATGTGCTACTCTCACTTCAATGATATCATCCACTCAATCATTGACATGGATGCTGATGTGATCACCATTGAGAACTCTCGTTCTGACGAAAAGCTCCTAAGGGTGTTCCGTGATGGAGTTAAGTATGGAGCTGGAATTGGCCCTGGAGTTTACGACATTCACTCTCCAAGAATACCACCAACCGAAGAAATTGCTGACAGGATGAACAAGATGCTTGCAGTGCTTGAGACCAACATTTTGTGGGTCAATCCTGATTGTGGTCTCAAAACTCGCAAGTACACCGAGGTGAATCCAGCCCTCACAAACATGGTCGCGGCCACAAAACTCATCCGCAACCAGCTTGCAAGTGGCAAGTAA 2298 0.4782 MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLEKVAADLRASIWKQMASAGIKYIPSNTFAYYDQVLNTTAMLGAVPPRYGWTGGEIGFDTYFSMGRGNASVPAMEMTKWFDTNYHFIVPELGPDMKFTYASHKAVNEYKEAKALGVDTIPVLVGPVTYLLLSKPANGVDPSFDLLTLLPKVIAVYKEVVEDLKAAGASWIQFDEPTLVLDLEPHKLHAFTAAYSDLASSLSGLNVLVETYFADIPADAYKTLTSLPGVTAFGVDLVRGGKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLTASLITLNGLENTVGKDKLVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKVVEVNALANALAGQKDDAFFSSNSSALASRKNSPRVTNEGVQKAAAALKGSDHRRATNVGTRLDAQQKKLNLPVLPTTTIGSFPQTPELRRVRREYKANKISEEEYVKEIKEEIRKVVELQEQLDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRSETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSAQAQYLDWAVHSFRITNVGVQDTTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLRVFRDGVKYGAGIGPGVYDIHSPRIPPTEEIADRMNKMLAVLETNILWVNPDCGLKTRKYTEVNPALTNMVAATKLIRNQLASGK 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07871 765 CDD CIMS_N_terminal_like 3 367 - -
Vifa1g07871 765 SUPERFAMILY UROD/MetE-like 398 760 IPR038071 -
Vifa1g07871 765 Gene3D - 5 525 IPR038071 -
Vifa1g07871 765 NCBIfam 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vifa1g07871 765 PIRSF Met_synth_MetE 1 765 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vifa1g07871 765 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 763 - -
Vifa1g07871 765 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 5 394 - -
Vifa1g07871 765 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 395 758 - -
Vifa1g07871 765 Pfam Cobalamin-independent synthase, Catalytic domain 432 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vifa1g07871 765 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Vifa1g07871 765 CDD CIMS_C_terminal_like 433 756 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vifa1g07871 765 Gene3D - 390 758 IPR038071 -
Vifa1g07871 765 Coils Coil 460 480 - -
Vifa1g07871 765 SUPERFAMILY UROD/MetE-like 3 395 IPR038071 -
Vifa1g07871 765 Pfam Cobalamin-independent synthase, N-terminal domain 3 316 IPR013215 GO:0003871|GO:0008270|GO:0008652
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07871 Vifa-Chr1 1228571949 1228575101 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07871 K00549 - gmx:547643 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07871 1 1228571949 1228575101 Vifa1g07871 1 1228571949 1228575101 ECH
Vifa1g07871 1 1228571949 1228575101 Vifa2g02137 2 551356754 551360529 PCT