Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02120 ATGGATTGCGTAACTCAATGTGTGAAGGCTGTGATGGGAAGTAGCAGTGACTCCGATGACACAAACACGAAATCTCAGAATTTTATAAGAGTGAAAGCTATTGTTACTTTGAAACATAGTGATGATGGTCTTCTAAAGAATCTTGTAGATGGAGGGATCCAACAGGTTGAAGAGTTAGTCGGAAAAACACTTGTGTTAGAACTTGTAAGCAATGAGCTTGATCAAGCAGCGAACTCCTCGGAGAAGGAGACAGCAAAAGGCTTGGCTCAATTTACAGAGGAAAAAGAGAACGACGAGCAATATGAGGCCGAATTCGAGCTATCCGTAAATTTTGGGAAGGTTGGTGCTATTTTTGTTGAAAACGAGCAACACAAGGAGGTTTTTCTAAAGAGTATAGTCCTTCATGGCTTCTCTGATGGCCCTCTCAATTTCACATGCAATTCTTGGATTCAACCGAAGCATGATAGTCCTGCAAAGAGAGTTTTCTTCACCGACAAGTCATATTTACCATCTCAAACACCGAAAGGGTTGCGAAGATTAAGAAAAGAAGAGCTAGTTCTACTGAGAGGGAATGGAGAAGGAGAAAGAAAAGAATCAGACAGAATATATGACTATGATGTGTACAATGATCTTGGAGATCCTGACACCAGCATTGAACTCAAAAGACCCGTTCTTGGTGGCACCAAACAATATCCATATCCTAGACGCTGTCGTACCGGTCGAAAGCATTCTGATGCAGACCCGTTGTATGAAAAAAGGAGTACTTTAAACTTCTATGTTCCTCGCGATGAGTCGTTTTCTGAAATAAAGCAGACACAATTCAACACTTCTACCATATCCTCAGGCTTGACTGCAGTTATACAATCCTTAGACACAATCCTCACTGATCCAAATCTTGGATTTGCAAGCTTTGAAGACATAGAAGAAATTTACAAAGAAGGTTTTCATTTACCGCCTCTTAAATCCAATGACTTGACGTTTCTCCAGAAGGTCATTCCAAAGTTGATTAAGGTTGCCAATGATAGCCAAAATCTTTTGCGCTTTGATGCCCCGGAACCGTTAAAAAGGGATAGATTCTTTTGGTTTTCAGACGTGGAGTTTGCCAGAGAAACTTTGGCCGGTGCCAATCCGTATAGCATCCAATTGGTTAAGGAATGGCCTTTGAAAAGTAAACTAGATGCCAAAGTCTATGGTCCACAAGAATCAGCGATTACTAGAGAAATCATTGAGTTGCAAATAATCACTTATAGCACATTTGAAGAGGCTATTAAAGAAAAGAAGTTGTTCATGCTAGACTATCATGATTTGTACTTACCATATGTAAGTAAAGTGAGAGAGATTGAGGGCACAACACTATATGGATCAAGAACACTATTCTTCCTCACCAATCAAGGCATATTGAAGCCATTAGCTATTGAGCTCACAAGACCGATTATTGACGGCAAGCCACAATGGAAGCAAGTCTTCACACCTGCTTCTCATTCCACCAATCTCTGGCTTTGGAGGCTTGCGAAAGCTCATGTTCTTGCTCATGAGTCTGGTCATCATGAACTTATAAGCCATTGGCTAAGAACTCATTGTGTTGTTGAACCTATAATAATTGCAACCTACAGACAACTCAGTTCCATGCATCCGATTTATAGATTATTGCATCCACATCTAAGATATACCATGGAGATCAATAAAGTTGCTCGCGAAGTGCTTATTAATGCAAACGGGATCCTTGAAATATCATTCTTTCCTAAAAAATATACAATGGAATTAAGCTCTGTGGCGTATGATAAGCTTTGGCAATTTGATTTGCAGGCACTTCCAAATGATCTTATCAATAGAGGAATGGCTGTGGAAGATCCTAATGCAGAACATGGCCTAAAGCTAGCAATTGAAGACTATCCTTTTGCAAATGATGGTCTTCTAATATGGGATGCAATCAAACAATGGGTGACAGACTATGTCAACCACTACTATCCAAGCCCGGAAATCGTAGAGTCTGACGAAGAGCTCCAAGCATGGTGGACAGAAATTAAAACAGTAGGACATGGTGACAAAAGCGAAGAAGCATGGTGGCCAAAACTCAAAACACAAAAAGACCTTATCGACATCATTACCACTATAGCTTGGGTAGCATCTGCACATCATTCAGCTGTGAACTTCACACAATATCCATATGGAGGCTATTTCCCAAATAGACCAACCATTGCTAGAAACAAAATGCCTACAGAAGACCCTACAAAAGAAGAATGGGAAAAATTCATCAACAAACCAGACCAAGCACTTTTAGAGTGTTTTCCATCACAAATTCAAGCAACTATATTTATGGTGATTTTGAACATATTATCAGCACATTCACCAGATGAAGAGTACATTGGTGAAAAAATAGAACCATCTTGGGGTGAGAATCCAACTATAAAAGCAGCCTTTGAAAAGTTTCATAGGAGATTGAAAGAGATTGAAGGTATTATAGACTCAAGGAATGAAAATAAGAATTTGAAGAACAGAAATGGAGCTGGTATAATGCCTTATGAGTCATTAAAGCCATTTTCAGGACCTGGAATTACTGGAAAAGGAGTTCCATATAGTATATCTATTTAA 2592 0.3939 MDCVTQCVKAVMGSSSDSDDTNTKSQNFIRVKAIVTLKHSDDGLLKNLVDGGIQQVEELVGKTLVLELVSNELDQAANSSEKETAKGLAQFTEEKENDEQYEAEFELSVNFGKVGAIFVENEQHKEVFLKSIVLHGFSDGPLNFTCNSWIQPKHDSPAKRVFFTDKSYLPSQTPKGLRRLRKEELVLLRGNGEGERKESDRIYDYDVYNDLGDPDTSIELKRPVLGGTKQYPYPRRCRTGRKHSDADPLYEKRSTLNFYVPRDESFSEIKQTQFNTSTISSGLTAVIQSLDTILTDPNLGFASFEDIEEIYKEGFHLPPLKSNDLTFLQKVIPKLIKVANDSQNLLRFDAPEPLKRDRFFWFSDVEFARETLAGANPYSIQLVKEWPLKSKLDAKVYGPQESAITREIIELQIITYSTFEEAIKEKKLFMLDYHDLYLPYVSKVREIEGTTLYGSRTLFFLTNQGILKPLAIELTRPIIDGKPQWKQVFTPASHSTNLWLWRLAKAHVLAHESGHHELISHWLRTHCVVEPIIIATYRQLSSMHPIYRLLHPHLRYTMEINKVAREVLINANGILEISFFPKKYTMELSSVAYDKLWQFDLQALPNDLINRGMAVEDPNAEHGLKLAIEDYPFANDGLLIWDAIKQWVTDYVNHYYPSPEIVESDEELQAWWTEIKTVGHGDKSEEAWWPKLKTQKDLIDIITTIAWVASAHHSAVNFTQYPYGGYFPNRPTIARNKMPTEDPTKEEWEKFINKPDQALLECFPSQIQATIFMVILNILSAHSPDEEYIGEKIEPSWGENPTIKAAFEKFHRRLKEIEGIIDSRNENKNLKNRNGAGIMPYESLKPFSGPGITGKGVPYSISI 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02120 863 ProSitePatterns Lipoxygenases iron-binding region signature 1. 516 530 IPR020833 GO:0016702|GO:0046872
Vifa2g02120 863 PRINTS Lipoxygenase signature 536 556 IPR013819 GO:0016702|GO:0046872
Vifa2g02120 863 PRINTS Lipoxygenase signature 516 533 IPR013819 GO:0016702|GO:0046872
Vifa2g02120 863 PRINTS Lipoxygenase signature 498 515 IPR013819 GO:0016702|GO:0046872
Vifa2g02120 863 ProSitePatterns Lipoxygenases iron-binding region signature 2. 543 553 IPR020834 GO:0016702|GO:0046872
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 453 477 IPR001246 GO:0016491
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 385 404 IPR001246 GO:0016491
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 346 362 IPR001246 GO:0016491
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 298 319 IPR001246 GO:0016491
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 134 152 IPR001246 GO:0016491
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 232 251 IPR001246 GO:0016491
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 160 181 IPR001246 GO:0016491
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 776 790 IPR001246 GO:0016491
Vifa2g02120 863 PRINTS Plant lipoxygenase signature 199 215 IPR001246 GO:0016491
Vifa2g02120 863 PANTHER LIPOXYGENASE 30 863 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vifa2g02120 863 SMART LH2_4 29 165 IPR001024 GO:0005515
Vifa2g02120 863 Gene3D - 513 861 - -
Vifa2g02120 863 Gene3D - 379 512 - -
Vifa2g02120 863 ProSiteProfiles PLAT domain profile. 43 164 IPR001024 GO:0005515
Vifa2g02120 863 Pfam PLAT/LH2 domain 98 163 IPR001024 GO:0005515
Vifa2g02120 863 Pfam Lipoxygenase 176 846 IPR013819 GO:0016702|GO:0046872
Vifa2g02120 863 FunFam Lipoxygenase 378 512 - -
Vifa2g02120 863 Gene3D PLAT/LH2 domain 29 186 - -
Vifa2g02120 863 SUPERFAMILY Lipoxigenase 169 863 IPR036226 -
Vifa2g02120 863 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 167 863 IPR013819 GO:0016702|GO:0046872
Vifa2g02120 863 FunFam Lipoxygenase 169 269 - -
Vifa2g02120 863 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 31 168 IPR036392 GO:0005515
Vifa2g02120 863 FunFam Lipoxygenase 495 862 - -
Vifa2g02120 863 Gene3D - 288 377 IPR027433 -
Vifa2g02120 863 Gene3D - 187 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02120 Vifa-Chr2 548585945 548589323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02120 110 863 Acyl Lipid Metabolism Gene Families AT3G45140 57.652 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02120 K00454 - gmx:100809699 1389.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04139 1 637450278 637452639 Vifa2g02120 2 548585945 548589323 PCT