Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04139 ATGTCAAGCGAAGAGACAAAATTGGAGAAGGAAAGAATCAAAGGTTACGTTCACTTGACGCATAGATCAGCAAAGGAGATTAAGTATGAAGCTGATTTTGAAGTACCAACAAATTTTGGTGAGATTGGTGCTGTTCTTGTGGAAAATGAGCATAAAAGAGAATCATTTATGAAAGAAATTGTTCTAGATGGCTTTCTCACTGGTCCTATTAAATTTTCTTGTGATTCTTGGGTTCATTCCAAGTTTGACAACCCTGATTTGAGAGTATTTTTCTCCAACAAGTGCTATTTGCCATCTGAAACACCGGAAGGATTAAAAAGGTTAAGAGAAGGCGAACTGGTAGCCTTACGAGGCAACAGACAAGGCGAACGAAAGGTTTTTGAACGTATATATGACTACGATGTGTACAATGATCTCGGAAATCCAGACAAGGATCCTGGTCTCAAGAGATCTGTTCTTGGTGGCAAAGAACATCCGTACCCGAGACGCTGTAGAACTGGAAGGCCTCGTTGTGCTAAAGATCCCTTGTCTGAGAAGCCAAGTGACAAAGTCTATGTTCCACGAGACGAAAGCTTCTCTGATGATATAACTTGCCTTCTCAACAACAAAAGGATTTGA 618 0.4045 MSSEETKLEKERIKGYVHLTHRSAKEIKYEADFEVPTNFGEIGAVLVENEHKRESFMKEIVLDGFLTGPIKFSCDSWVHSKFDNPDLRVFFSNKCYLPSETPEGLKRLREGELVALRGNRQGERKVFERIYDYDVYNDLGNPDKDPGLKRSVLGGKEHPYPRRCRTGRPRCAKDPLSEKPSDKVYVPRDESFSDDITCLLNNKRI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04139 205 SUPERFAMILY Lipoxigenase 97 194 IPR036226 -
Vifa1g04139 205 PRINTS Plant lipoxygenase signature 127 143 IPR001246 GO:0016491
Vifa1g04139 205 PRINTS Plant lipoxygenase signature 159 178 IPR001246 GO:0016491
Vifa1g04139 205 PRINTS Plant lipoxygenase signature 88 109 IPR001246 GO:0016491
Vifa1g04139 205 PRINTS Plant lipoxygenase signature 62 80 IPR001246 GO:0016491
Vifa1g04139 205 SMART LH2_4 1 93 IPR001024 GO:0005515
Vifa1g04139 205 ProSiteProfiles PLAT domain profile. 1 92 IPR001024 GO:0005515
Vifa1g04139 205 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 96 IPR036392 GO:0005515
Vifa1g04139 205 PANTHER LIPOXYGENASE 19 194 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vifa1g04139 205 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 95 205 IPR013819 GO:0016702|GO:0046872
Vifa1g04139 205 Pfam PLAT/LH2 domain 26 91 IPR001024 GO:0005515
Vifa1g04139 205 Gene3D PLAT/LH2 domain 1 96 - -
Vifa1g04139 205 MobiDBLite consensus disorder prediction 165 186 - -
Vifa1g04139 205 Pfam Lipoxygenase 104 194 IPR013819 GO:0016702|GO:0046872
Vifa1g04139 205 Gene3D - 97 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04139 Vifa-Chr1 637450278 637452639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04139 2 194 Acyl Lipid Metabolism Gene Families AT1G72520 48.980 4.90e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04139 K00454 - gmx:100787202 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04139 1 637450278 637452639 Vifa2g02120 2 548585945 548589323 PCT