Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01884 ATGGCCATGTGTAGGTGTGTTTTTGTTTTGTTTGGAAGGAAGAATAAAATCAAGGGCATTGAAAGATCTTCAAAAGGAGACCAGAAAAAGTTGCATGCCGAAGTTCGACACCAAACGATATCATCAAAGAGTCTTGATTTAAAGCCAGATGCCACCCAGTTGAATTCAAGGAGCAATGTGAAAATTATGAGTCTGGACAGTCCTATGAAGACTGGAGTTCAAGAAGCTTATGACGGCGGAGATGAGCATGAAGATTCACCTTCCATCAAAAGAGAGCTATCTGCTTTTGATCTCCGAGCTCATGAAGCTGTTGCAAGCAAAGGAGGATATGATCCAACAGGCAAAGAGATGAACTCCCCCTGTTTATATAAAAAACAAGTCAACATTCAATTGGAAGACGGAGACGATAAATACAACAAAAAGAGCGTTGATTTAATCCTAAGTGGGCATGTCAGTGATCCTGGGATAGGCAAGTGTGACTTCTGGGATTCTCCAAAGCTGAAGCGATCTTGTTCTAACCTGGAAAGAAGGGATATTCTACGGAAAACTGCTCATCACTTTCCATCTTCAAAGTCACAGTCTTTTGAGGATTTGCAGGAATTATCAGCAAATCAGATGGTTAATCTAGAAAGTCCCAGGTCAGTGATGACTCAGCGTAGTGCTGATAGAGTGATGTTGAAAAGGCGTTCGTCTAGTCAAGTTCTCCCTTCTGGAAGTAAGAAATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAACATTCATCGGCCCTTGGTCGGCAAATCAACACAATTACATCCTGCAAATGCTGCTTTAAATAATCAATGCGGATACTCTTCAGACATCCTGGAGCCAAAAAAAGGTAAGACATTGAGACATGTGAGATCACCCTCTCCTGCATCATCCTCCGGGGAGTACTTTAGCAATAGGGGCAAGGATAAAATTATTGATAATCCAAGGCGGAGCAGATTTCACAAGGAAAAAAACTTGGATTTTTGGACACAAAATCAATGGGTAGCCTTCTCAGCAGAACCCTCCTCCTTTAACAGAGTGGATGAGTGGGTGAAAGATCTTGAAAATCAGCAGCCACCTCCTGAGGATGATTTTACTGTCGACAATATTAGAACCATTGTCCATCCACCTTCTCCAGATGCTGATAGATCAATTGCAAGAAGCACAACTCAGTTGACTCGACATCAAGATGCCGATTTTTCAAAGGATATTTTGTATGCCAATAGCGTGGTCCAATCTCTGAATTCAGCCTCAACTGCAGCTCATATATGTGGTATTGGTATAAAAGCCATCCCCGCAATAGCACACTTCTCCAGTCTTCGTTCAGTGAATTTGTCTAACAACTTCATAGTTCATATCACACCTGGATTTCTCCCGAAGAGTCTTCACACACTAAATTTGTCAAGAAACAAGATCAGCACCATTGAGGGCCTCCGAGAATTAACCCGATTGCGTGTACTTGACCTAAGTTACAATCGCATATCAAGAATTGGACAAGGGTTATCAAATTGTACACCAGTTAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTAGAGGGGCTACACAGGTTATTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAAAATAACAACAACAAAAGCATTAGGCCAGCTTGTAGCAAACTACAACTCACTTCAGGCCCTGAATCTGCTTGGAAATCCAATTCAAAGCAACATCGATGATGAGCAACTGCGAAAAGCAGTTTGTGGTCTTCTTCCAAAGCTAGTATACCTGAACAAGGATGCCATCAAGCCTCAAAGGGCTCGAGAGATGCTCACTGATAGTGTTGCCAAAGCTGCACTTGGAAACAGCAGCCGGATCTCCAACAGAAGAGCACTGAAGAAAGGTGTCCAAGGAGGATCAAGTTCCTCCAGTGTGCATAGAAGCAGCGCTGGTTTAGCCCAGAAAAGCAGGCACAGGTCAAAGAGCCGATCTAAACATCAGTAG 1989 0.4284 MAMCRCVFVLFGRKNKIKGIERSSKGDQKKLHAEVRHQTISSKSLDLKPDATQLNSRSNVKIMSLDSPMKTGVQEAYDGGDEHEDSPSIKRELSAFDLRAHEAVASKGGYDPTGKEMNSPCLYKKQVNIQLEDGDDKYNKKSVDLILSGHVSDPGIGKCDFWDSPKLKRSCSNLERRDILRKTAHHFPSSKSQSFEDLQELSANQMVNLESPRSVMTQRSADRVMLKRRSSSQVLPSGSKKLWWKLFLWSHRNIHRPLVGKSTQLHPANAALNNQCGYSSDILEPKKGKTLRHVRSPSPASSSGEYFSNRGKDKIIDNPRRSRFHKEKNLDFWTQNQWVAFSAEPSSFNRVDEWVKDLENQQPPPEDDFTVDNIRTIVHPPSPDADRSIARSTTQLTRHQDADFSKDILYANSVVQSLNSASTAAHICGIGIKAIPAIAHFSSLRSVNLSNNFIVHITPGFLPKSLHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTPVKELYLAGNKISDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLQALNLLGNPIQSNIDDEQLRKAVCGLLPKLVYLNKDAIKPQRAREMLTDSVAKAALGNSSRISNRRALKKGVQGGSSSSSVHRSSAGLAQKSRHRSKSRSKHQ 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01884 662 Pfam Leucine rich repeat 443 498 IPR001611 GO:0005515
Vifa2g01884 662 ProSiteProfiles Leucine-rich repeat profile. 510 531 IPR001611 GO:0005515
Vifa2g01884 662 SUPERFAMILY Outer arm dynein light chain 1 435 596 - -
Vifa2g01884 662 ProSiteProfiles Leucine-rich repeat profile. 487 509 IPR001611 GO:0005515
Vifa2g01884 662 Gene3D Ribonuclease Inhibitor 387 504 IPR032675 -
Vifa2g01884 662 MobiDBLite consensus disorder prediction 621 646 - -
Vifa2g01884 662 FunFam Outer arm dynein light chain 1 protein 504 602 - -
Vifa2g01884 662 SMART LRR_typ_2 441 463 IPR003591 -
Vifa2g01884 662 SMART LRR_typ_2 485 508 IPR003591 -
Vifa2g01884 662 SMART LRR_typ_2 530 552 IPR003591 -
Vifa2g01884 662 ProSiteProfiles Leucine-rich repeat profile. 465 486 IPR001611 GO:0005515
Vifa2g01884 662 ProSiteProfiles Leucine-rich repeat profile. 532 553 IPR001611 GO:0005515
Vifa2g01884 662 MobiDBLite consensus disorder prediction 288 314 - -
Vifa2g01884 662 PANTHER NISCHARIN RELATED 199 647 - -
Vifa2g01884 662 FunFam Outer arm dynein light chain 1 protein 390 503 - -
Vifa2g01884 662 SMART LRR_sd22_2 463 484 - -
Vifa2g01884 662 SMART LRR_sd22_2 485 507 - -
Vifa2g01884 662 SMART LRR_sd22_2 530 551 - -
Vifa2g01884 662 SMART LRR_sd22_2 508 529 - -
Vifa2g01884 662 MobiDBLite consensus disorder prediction 647 662 - -
Vifa2g01884 662 Pfam Leucine Rich repeat 532 544 IPR001611 GO:0005515
Vifa2g01884 662 MobiDBLite consensus disorder prediction 621 662 - -
Vifa2g01884 662 Gene3D Ribonuclease Inhibitor 505 602 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01884 Vifa-Chr2 490877911 490880162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01884 436 562 Receptor kinase-like Gene Family AT4G08850 34.058 2.21e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01884 - - cam:101493323 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01884 2 490877911 490880162 Vifa2g01884 2 490877911 490880162 ECH
Vifa1g00506 1 84366339 84368870 Vifa2g01884 2 490877911 490880162 PCT