Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00506 ATGGCAATATTGAGTTGCTTTTCGATTTTGAATGAGTTTAAGGTGAAAAAAAAGGCAGGGAAAGAAAAATCTACGAAAAAGAATTTCGGTACTCTAATTTCCAAACTACAACACTCGGTATCATCTAAGTCGTATGATTTGGAGCCAGCCACTTTTGATCTTACTGTAACCAATGGTTTTATGAAAAACTCGAGGAGTGATGTTAGGGTTATGCCTCTTGAGAGTCCTATGAAAGCTGGAGTGGGAGAAGTTTATGAAGGTGGCGATGAAACTGAGAATGAAAATCCGTCCTCAATCAAGAGGGAGCTCTCGGGTTTTGATATTCAATCCGATGAACCTGTTGCAATCAAAGAAGGGTATGATCCAAAAGAGAAAAACCAAGTCAGCGATGAATTGGAAGATCAAAGTGATAGATATAGCCGAAAGAGTGATGATACAAACCATAGTGGACATGTGAGTGATCCTGGTATTGGGAAATCTGATTTTTTGGCTTCTCCAAACCTCATGCGGTCGTGCTCTAACCTTGAAAGTAAGGATGTTCGTAGCCAGATAAATGAATACTCATGTCCTTCAAAGTCGCTATCTTTTGAAGACTTTTGCGATTTATCGACAAACCCGATGGATAATCTTAAGAGGTCTAGGTCTGTGAAGAGTCACTGCAGTGCTGATAGAGTGATGTTGAAACGACATTCTATAAGTCAAATACTCCCGTCTGGAAGTAAAAAATTGTGGTGGAAGTTGTTCCTCCGGAGTCAGACGAACATACATAGAACATTCTCTAGAAAATCGAAACTTGTTCCTGCTATTAGTTCTTTAAGCGATCAACTAGGGTATTCTTCTAACACCCTCGAACCAAAACATTTGAAGGCAATGAAACATGTGCAATCCTCCGTGTCAATTACTGCACAATCCATTAGTGAAATCATCGATGGCGATGATCAAAGGCAGAACAGATTTCCTGACCAATGGCTTGCTTTCTCGAAAGAATCATCTTCTTATGACCGGGTGGATGCGTGGATCAAAGATCTTGAAATTCAGGAACCAGTTCCGGAGGATGGTGTTCTTGATTACAATGCCAGAAGCATTTCCTTCCCATCTTTTCCCGAGGCCGGTAGACCAATGATAGGAAGCACATCTCAATTGACTTATTCAAATTCCAATCTTTCAAAGGATATTTTGAAAGCCAATAGTATGGTCCAGTCTCTAAATCCAGGTTCATCGGTTGCTCACATATCCGGCGTTGGCATAAAAGCCATCCCCGTAATATCATATTTCTCCAATCTCCGCTATGTCAATTTGTCCAACAATTTCATAGTTAGCATCATACCAGGATGTCTACCAAAGAGTGTTCAAACACTTAATTTGTCAAGAAACAAGATTAGCACCATTGACGGCCTCAAAGAATTGACCCGGTTGCGAGTACTTGACCTGAGTTACAACTGCATCTCAAGAATTGGACAAGGTTTATCGAGTTGTACACTTGTCAAGGAGCTATATCTTGCTGGAAACAAGATAAACGATATTGAGGGACTACACAGGTTGTTTAAGCTAACAGTTCTGGACCTGAGCTTCAACAAAATCACCTCAACGAAATCTTTAGGTCAGCTCGTGGCTAACTACAACTCACTCCAGGCTCTTAATCTACTAGGAAACGCTATTCAGAGAAACATCGGTAACCAACAGCTAAACAAATCTGTATCTGGTCTTCTTCCAAATCTGGTGTTTCTGAACAAACAACCTTTCAAGAATAAAAGGGCGGCGCAGAACATATTTATTGATAGTGCTACCAATGCTGCACTTGGGAACAGCAACAAGCGGAGCTCCGGAAGAAGATCAATGAATCGAGTTGGACAACTGCGAGAAGGATCGAGTGTCACGTCAAAAGGCAGGAACGGGACAAGGAGGTGA 1908 0.4125 MAILSCFSILNEFKVKKKAGKEKSTKKNFGTLISKLQHSVSSKSYDLEPATFDLTVTNGFMKNSRSDVRVMPLESPMKAGVGEVYEGGDETENENPSSIKRELSGFDIQSDEPVAIKEGYDPKEKNQVSDELEDQSDRYSRKSDDTNHSGHVSDPGIGKSDFLASPNLMRSCSNLESKDVRSQINEYSCPSKSLSFEDFCDLSTNPMDNLKRSRSVKSHCSADRVMLKRHSISQILPSGSKKLWWKLFLRSQTNIHRTFSRKSKLVPAISSLSDQLGYSSNTLEPKHLKAMKHVQSSVSITAQSISEIIDGDDQRQNRFPDQWLAFSKESSSYDRVDAWIKDLEIQEPVPEDGVLDYNARSISFPSFPEAGRPMIGSTSQLTYSNSNLSKDILKANSMVQSLNPGSSVAHISGVGIKAIPVISYFSNLRYVNLSNNFIVSIIPGCLPKSVQTLNLSRNKISTIDGLKELTRLRVLDLSYNCISRIGQGLSSCTLVKELYLAGNKINDIEGLHRLFKLTVLDLSFNKITSTKSLGQLVANYNSLQALNLLGNAIQRNIGNQQLNKSVSGLLPNLVFLNKQPFKNKRAAQNIFIDSATNAALGNSNKRSSGRRSMNRVGQLREGSSVTSKGRNGTRR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00506 635 MobiDBLite consensus disorder prediction 601 635 - -
Vifa1g00506 635 MobiDBLite consensus disorder prediction 81 161 - -
Vifa1g00506 635 Gene3D Ribonuclease Inhibitor 355 491 IPR032675 -
Vifa1g00506 635 Pfam Leucine Rich repeat 516 529 IPR001611 GO:0005515
Vifa1g00506 635 FunFam Protein phosphatase 1 regulatory subunit pprA 386 567 - -
Vifa1g00506 635 ProSiteProfiles Leucine-rich repeat profile. 516 537 IPR001611 GO:0005515
Vifa1g00506 635 ProSiteProfiles Leucine-rich repeat profile. 471 493 IPR001611 GO:0005515
Vifa1g00506 635 ProSiteProfiles Leucine-rich repeat profile. 449 470 IPR001611 GO:0005515
Vifa1g00506 635 MobiDBLite consensus disorder prediction 114 149 - -
Vifa1g00506 635 SUPERFAMILY Outer arm dynein light chain 1 417 562 - -
Vifa1g00506 635 PANTHER NISCHARIN RELATED 205 615 - -
Vifa1g00506 635 Gene3D Ribonuclease Inhibitor 492 588 IPR032675 -
Vifa1g00506 635 ProSiteProfiles Leucine-rich repeat profile. 494 515 IPR001611 GO:0005515
Vifa1g00506 635 SMART LRR_sd22_2 492 513 - -
Vifa1g00506 635 SMART LRR_sd22_2 469 491 - -
Vifa1g00506 635 SMART LRR_sd22_2 447 468 - -
Vifa1g00506 635 SMART LRR_sd22_2 514 535 - -
Vifa1g00506 635 SMART LRR_typ_2 425 448 IPR003591 -
Vifa1g00506 635 SMART LRR_typ_2 469 492 IPR003591 -
Vifa1g00506 635 SMART LRR_typ_2 514 536 IPR003591 -
Vifa1g00506 635 Pfam Leucine rich repeat 426 480 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00506 Vifa-Chr1 84366339 84368870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00506 420 594 Receptor kinase-like Gene Family AT5G56040 33.161 1.88e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00506 - - tpra:123920827 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00506 1 84366339 84368870 Vifa1g00506 1 84366339 84368870 ECH
Vifa1g00506 1 84366339 84368870 Vifa2g01884 2 490877911 490880162 PCT