Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01867 ATGGAAGGAAAAACCAATAAGAACAAAGTGGAAAAAGTTGAATTAGGCTGTAGTTTCATGGCCAAAATCTTCAAACTCAAAGCCAACAAGCCAAAAAATTCATCATCTGTTCATTCACTACCCATCAAAACATTTAACAATACACAACTAAATGAATCCAAAGGGTCACCAAATCACATCTCAAAAGTTTCAACAGAGCCTCAACCAGTTAAAAATCACACACCTTTAGATTCTGCTAGAAGCTCAATTCAACAGAGAGAGGTTAATGGTAATTCCTCAGGACTTGCAAGAATAAGCACTGCTAGTCGTCCTCATCGCGACAACGAAAACAAGTCACCAAGCATAGATTCGAGCACGATAAAACTCACTGGGAATTTGCTTATGAATAGTAGCTATATTAGTCCAAGAACAAGTGTTACAAAGATTAATAAAGAGGTGAATTCTGTGTCATGTTCTGTGAGTAACGGTGTTATGGGGAATATAATAAGGAAAAGTGGTGATGGTGTGTCGCAATTTCGAAGTCCTAGAAGTAACAGAGTAGTTGATCCTGAGGTGCTGAAATCAATGGGAAATGAAGCTTATAAGCAAGGAAGATTTTATGAGGCTTTGGCTTTGTATGAAAGAGCTATTGCTATTGATTCTAATAAGGCAACATATCGTTGTAACAAGAGTGCTGCTTTAATTGGTTTGGGAAGGTTTCGACAAGCAATTGTTGAGTGTGAGGAAGCTATTAGGATTCAACCTTCCTATGCTAGAGCTCATAGCCGTTTAGCAACAATATATTTCAGGTTGGGAGAAGCAGAAAAGGCATTAAATTGCAATAAAGAAATTCCATACTTTGATTCAGGTCTTGCTTTCAAAGCACATGCTCTTCAAATTCACCTTAACAAATGCAGTGAAGCAAGAAAAGTCAATGATTGGAAACTTATATTGACAGAAACAAAGTCTGCAATATACTTAGGTGTAGACTCAGCTCCAAAGGTCTATGCTTTACAAACTGAAGCCTTGTTGAAACTTCTGAGACATCAAGAAGCATATGCCACCTATGAAAAGATGCCAAAATTTGACCATGATTGGTGCAACAAATTATTTGGACCAATTTCTAGTGCCTACTTTTTAATGATAGGAGCACAAATTTACTTAGCAACCGGCAGGTTTGAGGATGCTATGACAACATCACAACAGGCATCTAAGCTTGATCCGAGCAACAGTGATGTGAATGCAGTGGTAAGAAGGGCAAGAACCGCGACATCTGCAAGATTGAGCGGTAACTTGCTCTTTAAGGCATCAAAGTTCACGGAAGCCTGTGCGGTATACAATGAAGGACTAGAGCATGATCCGTTCAACTCTGTCCTGCTATGTAACAGGGCGGCATGTCGTTCTAAGCTAGGTCAATATGAGAAAGCAATTGAAGATTGCAGTGTAGCTCTTAAAGTTCAGCCTAGTTATAGCAAGGCAATGTTGCGTCGCGCTGATTGTAATGCCAAGTTGGAAAGATGGGAGGCTGCAATTCAAGACTATGAAATGTTGATTAGAGAAAAGCCAGGGGATGAGGAAGTTGCTAGAGCTTTGTTTGAGATCCATCTAAAACAAAAGATATTGCGCGGAGAAGATATCAAGAACTTGAAGTTTGGTTCAAATTTGGTTTGCATCTCAAGCAATGATAAGTTTAGACATTATGTAACTTCACCTGGTATGTCTGTGGTGCTTTTTTGCAACAAGGGAAAAGCAACTCATAATCAAATTTTGTTGGTGTTAGAGCAAACCTGCAAGAGATTCCCATCAGTTAATTTCCTTAAGGTGGAGATCGAGGACCATCCTTACTTAACAAAATCAGAAGGTGTAAACACCATTCCAGCTTTCAAAATATACAAGAATGGATCAAGGGTAAAAGAAATTTCTGGCAACAACCATGAGTTGTTAGAAAAATCAATTAAATTATATAGCAGCTGA 1953 0.3861 MEGKTNKNKVEKVELGCSFMAKIFKLKANKPKNSSSVHSLPIKTFNNTQLNESKGSPNHISKVSTEPQPVKNHTPLDSARSSIQQREVNGNSSGLARISTASRPHRDNENKSPSIDSSTIKLTGNLLMNSSYISPRTSVTKINKEVNSVSCSVSNGVMGNIIRKSGDGVSQFRSPRSNRVVDPEVLKSMGNEAYKQGRFYEALALYERAIAIDSNKATYRCNKSAALIGLGRFRQAIVECEEAIRIQPSYARAHSRLATIYFRLGEAEKALNCNKEIPYFDSGLAFKAHALQIHLNKCSEARKVNDWKLILTETKSAIYLGVDSAPKVYALQTEALLKLLRHQEAYATYEKMPKFDHDWCNKLFGPISSAYFLMIGAQIYLATGRFEDAMTTSQQASKLDPSNSDVNAVVRRARTATSARLSGNLLFKASKFTEACAVYNEGLEHDPFNSVLLCNRAACRSKLGQYEKAIEDCSVALKVQPSYSKAMLRRADCNAKLERWEAAIQDYEMLIREKPGDEEVARALFEIHLKQKILRGEDIKNLKFGSNLVCISSNDKFRHYVTSPGMSVVLFCNKGKATHNQILLVLEQTCKRFPSVNFLKVEIEDHPYLTKSEGVNTIPAFKIYKNGSRVKEISGNNHELLEKSIKLYSS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01867 650 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 7 646 IPR044534 -
Vifa2g01867 650 Pfam Tetratricopeptide repeat 452 483 IPR001440 GO:0005515
Vifa2g01867 650 SUPERFAMILY Thioredoxin-like 539 646 IPR036249 -
Vifa2g01867 650 SUPERFAMILY TPR-like 183 405 IPR011990 GO:0005515
Vifa2g01867 650 SMART tpr_5 484 517 IPR019734 GO:0005515
Vifa2g01867 650 SMART tpr_5 370 403 IPR019734 GO:0005515
Vifa2g01867 650 SMART tpr_5 416 449 IPR019734 GO:0005515
Vifa2g01867 650 SMART tpr_5 217 250 IPR019734 GO:0005515
Vifa2g01867 650 SMART tpr_5 251 284 IPR019734 GO:0005515
Vifa2g01867 650 SMART tpr_5 450 483 IPR019734 GO:0005515
Vifa2g01867 650 SMART tpr_5 183 216 IPR019734 GO:0005515
Vifa2g01867 650 CDD TRX_family 557 646 - -
Vifa2g01867 650 Coils Coil 490 510 - -
Vifa2g01867 650 Pfam Tetratricopeptide repeat 183 215 IPR013105 -
Vifa2g01867 650 Gene3D Glutaredoxin 541 649 - -
Vifa2g01867 650 MobiDBLite consensus disorder prediction 29 99 - -
Vifa2g01867 650 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515
Vifa2g01867 650 Pfam Tetratricopeptide repeat 377 449 - -
Vifa2g01867 650 Pfam Tetratricopeptide repeat 226 271 - -
Vifa2g01867 650 SUPERFAMILY TPR-like 420 532 IPR011990 GO:0005515
Vifa2g01867 650 MobiDBLite consensus disorder prediction 29 118 - -
Vifa2g01867 650 ProSiteProfiles TPR repeat profile. 370 403 IPR019734 GO:0005515
Vifa2g01867 650 Pfam Tetratricopeptide repeat 486 515 IPR019734 GO:0005515
Vifa2g01867 650 Gene3D Tetratricopeptide repeat domain 181 534 IPR011990 GO:0005515
Vifa2g01867 650 Pfam Thioredoxin 580 645 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01867 Vifa-Chr2 486227778 486231413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01867 195 514 Glycosyltransferase AT3G04240 21.493 3.35e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01867 K09527 - gmx:100787041 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01867 2 486227778 486231413 Vifa2g01867 2 486227778 486231413 ECH
Vifa1g00446 1 70973016 70975941 Vifa2g01867 2 486227778 486231413 PCT