Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00446 ATGAAAACCAAACACAACAAGGTTGAAAATGAATTAGGTTGTGGTTTCATGGAGAGGATTTTCAATCTCAAAACTCCTAGACTAAGAAACTCATTAGTCCATTCCCTACCAATGAAAACTAACAACATTGATCATCTAAGAAATGAATCAAACTTGTCTCCAAACAAAGTGAAAAGAATCTCCAACATCGTTACACTCACTAAAAATCCGAAGCATATTTCAGATACTTCTTCAACAAGCTCGACATCATTATCGTCAGCAGATAATTCAACCCACAAAAGGGTTGAACAAAACTGCAATACGAACCATGATGTCAAGCTTCAAATAGAATCGATCCGAAATTCTCTACAACTTCCTAGAATAAGCACTGTCCGTTCGCACGTCAACGAAAACAAGTCCTTAGCCAAAGACTTTGCTCCCTTGAAACTCACAGGAAACTTGCTAGTGAATAACACTCCAAGAAGAAAAAGTGTTGAATGTTTACATAAGCATTCAGAGATGAACTCTATGTCAAGTTTTTATAATAGTAACAATGCTAGAAAAATGGTTATGGGGAATATCATGAGGAGGAATAGTAACGAACTTGCACAGTTTTTAAACCAAAGACACAGTACTAAAGAACCTGAATGGTTGAAATCAAAGGGAAATGAAGCTTACAAAAAGGGTGATTTTGTAGAGGCTTTGTCTCTGTATGATAAAGCAATTTCTCTTGACTCGAAGAAGGCAACTTATCATTGTAACAAAAGTGCTGCTTTGATTGGATTAGGAAGGTTTCAAGAAGCGATTCTCGAGTGCGAGGAATCGGTTCGGTTGGATCCTTCTTATAACAGAGCTCACAATCGTTTGGCTACAATATATTTCAGATTGGGAGAAGTTGAGAAGGCGCTGGATTGCAACCGATCAACCTCGTGTGTCGATTCTGTTCTTGCTTTTCAAGCTCAGGCTCTACAAAATCACATCAACAAATGCATTGAAGCTAGGAAGTTCAATGAATGGAGTGTTGTATTAAAGGAAACACAGTCTGCATTATCCTTAGGCGCTGATTCAGCCCCACGGATTTATGCTTTACAAACTGAAGCCTTGTTGAAGCTCCTAAGATATGAAGATGCAAATGCTGTTTATGACAAAATGGCAAAATTTTCACTTGATTGGTGTAACAAGATATTTGGCATGGCTACTAGTGCTTACATATTGATCATAGGCGCACAGGTTTACTTGGCATCTGGCAGGTTTGAGGATGCTGTCACAACAGCTCAGAAAGCAGCTAGGGTTGATCCAAGCAACAGAGAGATTTTTTCAGTGTTAAAGAGAGCGAGAGCAGTAACATCGGCTAGAGTGAGTGGAAACTTACTCTTCAAGGCATCAAAATTCAGTGAAGCATGTGCAGTATACAATGAAGGACTAGATCATGATCCACACAACTCAGTTCTGCTATGCAACAGAGCTGCATGTCGTTCTAAGCTAGGCCAATACGAAAACGCAATAGAAGACTGTGATTCGGCACTTATGCTTCATCCATCTTATAGCAAAGCTAAGCTAAGGAGGGCATATTGTAATGCCAAGTTGGAAAGATGGGAAGTTGCAATTCAAGACTATGAAATGCTAATAAGAGAAAAGCCAGGGGATGAAGAAGTGGCAAGGGCTTTATTTGAGGCTAAACTCCAAGTCAGAATACTACATGGTGAAGATGTTAAGGATTTGAAATTTGGTTCGAATTTGGTTTATATCTCGAGTAATGATCGTTTCAGACATTACGTAACCTCGCCTGGTATGGCTGTTGTGCTTTTTAGTAACAAGGGAACACACAAGCAAGTGTTGATGGTGCTCGAGCAAATCAGCAAGAGATTTCCATCTGTTAATTTTCTTAAGGTGGAGATTGAAGATCACCCCTACTTGGCGAAATCAGAAGGCGTGAGCTCATTCCCGACCTTCAAAATATACAAGAATGGATCAAGGGTTGAAGAGATTTCAGGAAGCAATCACGAGTTGTTAGAAAGATCAATTAAGTTATATAGCAGCTGA 2022 0.3932 MKTKHNKVENELGCGFMERIFNLKTPRLRNSLVHSLPMKTNNIDHLRNESNLSPNKVKRISNIVTLTKNPKHISDTSSTSSTSLSSADNSTHKRVEQNCNTNHDVKLQIESIRNSLQLPRISTVRSHVNENKSLAKDFAPLKLTGNLLVNNTPRRKSVECLHKHSEMNSMSSFYNSNNARKMVMGNIMRRNSNELAQFLNQRHSTKEPEWLKSKGNEAYKKGDFVEALSLYDKAISLDSKKATYHCNKSAALIGLGRFQEAILECEESVRLDPSYNRAHNRLATIYFRLGEVEKALDCNRSTSCVDSVLAFQAQALQNHINKCIEARKFNEWSVVLKETQSALSLGADSAPRIYALQTEALLKLLRYEDANAVYDKMAKFSLDWCNKIFGMATSAYILIIGAQVYLASGRFEDAVTTAQKAARVDPSNREIFSVLKRARAVTSARVSGNLLFKASKFSEACAVYNEGLDHDPHNSVLLCNRAACRSKLGQYENAIEDCDSALMLHPSYSKAKLRRAYCNAKLERWEVAIQDYEMLIREKPGDEEVARALFEAKLQVRILHGEDVKDLKFGSNLVYISSNDRFRHYVTSPGMAVVLFSNKGTHKQVLMVLEQISKRFPSVNFLKVEIEDHPYLAKSEGVSSFPTFKIYKNGSRVEEISGSNHELLERSIKLYSS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00446 673 SUPERFAMILY Thioredoxin-like 527 668 IPR036249 -
Vifa1g00446 673 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 12 669 IPR044534 -
Vifa1g00446 673 SUPERFAMILY TPR-like 447 554 IPR011990 GO:0005515
Vifa1g00446 673 CDD TRX_family 582 669 - -
Vifa1g00446 673 Pfam Tetratricopeptide repeat 477 508 IPR001440 GO:0005515
Vifa1g00446 673 SUPERFAMILY TPR-like 207 431 IPR011990 GO:0005515
Vifa1g00446 673 Pfam Tetratricopeptide repeat 402 474 - -
Vifa1g00446 673 Pfam Tetratricopeptide repeat 251 296 - -
Vifa1g00446 673 SMART tpr_5 395 428 IPR019734 GO:0005515
Vifa1g00446 673 SMART tpr_5 276 308 IPR019734 GO:0005515
Vifa1g00446 673 SMART tpr_5 475 508 IPR019734 GO:0005515
Vifa1g00446 673 SMART tpr_5 441 474 IPR019734 GO:0005515
Vifa1g00446 673 SMART tpr_5 242 275 IPR019734 GO:0005515
Vifa1g00446 673 SMART tpr_5 509 542 IPR019734 GO:0005515
Vifa1g00446 673 SMART tpr_5 208 241 IPR019734 GO:0005515
Vifa1g00446 673 MobiDBLite consensus disorder prediction 68 95 - -
Vifa1g00446 673 Gene3D Tetratricopeptide repeat domain 207 558 IPR011990 GO:0005515
Vifa1g00446 673 ProSiteProfiles TPR repeat profile. 208 241 IPR019734 GO:0005515
Vifa1g00446 673 Gene3D Glutaredoxin 567 672 - -
Vifa1g00446 673 Pfam Thioredoxin 579 666 IPR013766 -
Vifa1g00446 673 ProSiteProfiles TPR repeat profile. 395 428 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00446 Vifa-Chr1 70973016 70975941 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00446 K09527 - gmx:100791862 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00446 1 70973016 70975941 Vifa2g01867 2 486227778 486231413 PCT