Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01848 ATGACCCTCTCATCTACCACCTTTACCTTTCTCACCATCATCTTCCTTTTCCTCACTCTCACTCCCAACCTCACCCTCACTCAGCTCCCTCCATTTGCTTGTGACTCTTCAAATCCATCCACCAGATCCTACCCATTTTGCAACCCAAAGCTTCCCATCACACAACGAACCAGAGACCTTGTTTCCAGACTCACATTGGACGAGAAACTCTCTCAACTTGTTAACTCAGCTCCTCCAATTCCCCGACTCGGCATCCCTGGTTACCAGTGGTGGAGTGAAGCACTTCATGGAGTTGGCAATGTTGGACGTGGTATATTCTTCAATGGCACTATCACATCTGCAACTAGCTTCCCTCAAGTTATCCTCACCGCAGCTACATTTGATTCCCACCTTTGGTACCGAATCGGTCAGGTAATTGGGATTGAAGCTAGAGCAATGTACAATGGAGGGCAAGCAATGGGGATGACATTTTGGGCACCAAACATAAACATATTTAGGGATCCAAGATGGGGTAGAGGACAAGAAACAGCTGGTGAAGACCCTATGATGACTTCTAATTATGCTGTTTCCTATGTTAGAGGACTTCAAGGTGATTCCTTTCAAGGTGGTAAATTGAGGGGACACCTTCAAGCTTCTGCTTGTTGCAAACATTTCACTGCCTATGATTTGGATAATTGGAAGGGTGTTAATCGCTTTCACTTCGATGCTAAAGTGAGTTTGCAAGATTTAGCAGACACATATCAGCCACCATTTCGTAGTTGCGTTGAGCAAGGACGAGCTAGTGGGATAATGTGTGCTTATAACCGTGTAAATGGTGTTCCAAGTTGTGCTGATTACAATCTCTTAACTAAAACAGTTAGGAAACAATGGGGATTCCACGGGTATATTGCATCAGATTGTGGAGCTGTTGGTATCATACATGACCAGCAAGGATATGCAAAATCAGCAGAAGATGCTGTTGCCGATGTTATGCAAGCTGGGATGGATTTGGAATGTGGAACTTATTTGACAGACCATGCAGAATCAGCAGTGCAGCAGAAGAAGTTACCTATATATCAAATAGACCGTGCCCTTCATAATCTATTTTCAATTAGAATAAGGCTAGGCTTATTTGGTGGAAATCCAACCAAGCTTCCATTTGGAATGATTGGTCCCAACCACGTCTGTTCCGAAAATCACTTATATCTAGCTCTTGAAGCTGCAAGGAACGGCATTGTCCTTTTAAAGAACACTGCTTCACTTCTTCCACTTCCAAAAACAAGTAGTATTTCCTTAGCAGTGATAGGTCCTAATGCCAATGCTTCACCTTTAACTCTTCTAGGAAACTATGCCGGTCCTCCTTGTAAATCTATCACTATACTCCAAGGGTTTCAACATTATGTTAAGGACGCTGTTTTCCATCCTGGCTGTGATGGTGGACCAAAGTGTGCTTCAGCTCAAATAGACCAAGCAGTGGAAGTTGCAAAGAAAGTTGATTATGTGATTTTGGTTATGGGATTGGATCAAAGTGAAGAGAGGGAAGAACGTGATCGTGTCCACCTTGACTTGCCAGGCAAGCAACTTGAACTCATTAAAAATGTTGCCAAAGCTTCTAAGCGACCGGTTATTTTGGTGCTCCTTTGTGGAGGGCCTATAGATATTAGTTCGGCCAAATATGAGGATAAAATTGGAGGTATCATTTGGGCTGGTTATCCTGGTGAACTTGGAGGCATTGCGCTTGCACAGATTATCTTTGGTGATCACAATCCAGGAGGAAGATTACCAATTACTTGGTACCCAAAAGATTACATAAAAGTGCCAATGACAGACATGAGAATGAGAGCTGATCCTTCAACCGGCTATCCAGGAAGAACTTACAGATTTTACAAGGGTCCTACAGTGTATGAATTTGGCCACGGACTAAGCTACACAAAATATTCCTATGAGTTTGTTTCGGTTACACGTGACAAACTTCATTTCAATCTATCCTCCACTCATTTGACGGTTGAAAATTCAGAAACCATAAGGTACAAATTAGTTCCAGAGCTGAGTGAAGAAACCTGCAAGAGCATGTCAGTTTCAGTCACAATTGGTGTCAAAAACCATGGAAACATGGTGGGGAGGCATCCTATATTGCTGTTTATGAGACCACGAAAGCAGAGAATTGGAAGTCCTAGGAAACAATTGGTTGGCTTTCATAGTTTGTTGTTAGATGCTGGGGAAATGAGCCATGTTGGATTTGAGCTTAGTCCTTGTGAGCATCTTAGTCGAGCGAACGAGGCTGGTTTAAAGATCATAGAAGAAGGGTCTCATTTTTTACTTGTGGGAGATGAAGAATATCTAATAGATATCATTGTTTGA 2340 0.4261 MTLSSTTFTFLTIIFLFLTLTPNLTLTQLPPFACDSSNPSTRSYPFCNPKLPITQRTRDLVSRLTLDEKLSQLVNSAPPIPRLGIPGYQWWSEALHGVGNVGRGIFFNGTITSATSFPQVILTAATFDSHLWYRIGQVIGIEARAMYNGGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPMMTSNYAVSYVRGLQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVNRFHFDAKVSLQDLADTYQPPFRSCVEQGRASGIMCAYNRVNGVPSCADYNLLTKTVRKQWGFHGYIASDCGAVGIIHDQQGYAKSAEDAVADVMQAGMDLECGTYLTDHAESAVQQKKLPIYQIDRALHNLFSIRIRLGLFGGNPTKLPFGMIGPNHVCSENHLYLALEAARNGIVLLKNTASLLPLPKTSSISLAVIGPNANASPLTLLGNYAGPPCKSITILQGFQHYVKDAVFHPGCDGGPKCASAQIDQAVEVAKKVDYVILVMGLDQSEEREERDRVHLDLPGKQLELIKNVAKASKRPVILVLLCGGPIDISSAKYEDKIGGIIWAGYPGELGGIALAQIIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPTVYEFGHGLSYTKYSYEFVSVTRDKLHFNLSSTHLTVENSETIRYKLVPELSEETCKSMSVSVTIGVKNHGNMVGRHPILLFMRPRKQRIGSPRKQLVGFHSLLLDAGEMSHVGFELSPCEHLSRANEAGLKIIEEGSHFLLVGDEEYLIDIIV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01848 779 Gene3D - 56 378 IPR036962 GO:0004553|GO:0005975
Vifa2g01848 779 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 405 639 IPR036881 GO:0004553|GO:0005975
Vifa2g01848 779 FunFam probable beta-D-xylosidase 7 56 377 - -
Vifa2g01848 779 Pfam Glycosyl hydrolase family 3 C-terminal domain 405 636 IPR002772 GO:0004553|GO:0005975
Vifa2g01848 779 Gene3D Immunoglobulins 665 777 IPR013783 -
Vifa2g01848 779 SUPERFAMILY (Trans)glycosidases 44 403 IPR017853 -
Vifa2g01848 779 PRINTS Glycosyl hydrolase family 3 signature 285 303 IPR001764 GO:0004553|GO:0005975
Vifa2g01848 779 PRINTS Glycosyl hydrolase family 3 signature 211 227 IPR001764 GO:0004553|GO:0005975
Vifa2g01848 779 PRINTS Glycosyl hydrolase family 3 signature 117 136 IPR001764 GO:0004553|GO:0005975
Vifa2g01848 779 FunFam probable beta-D-xylosidase 2 390 637 - -
Vifa2g01848 779 Pfam Glycosyl hydrolase family 3 N terminal domain 111 361 IPR001764 GO:0004553|GO:0005975
Vifa2g01848 779 SMART Fn3_like_2 702 772 IPR026891 -
Vifa2g01848 779 Pfam Fibronectin type III-like domain 705 770 IPR026891 -
Vifa2g01848 779 Gene3D - 391 637 IPR036881 GO:0004553|GO:0005975
Vifa2g01848 779 PANTHER SUGAR HYDROLASE-RELATED 28 774 IPR044993 GO:0009044|GO:0045493
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01848 Vifa-Chr2 479946938 479950116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01848 30 772 Glycoside Hydrolase AT1G78060 65.550 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01848 - - aprc:113867121 1363.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01848 2 479946938 479950116 Vifa2g01848 2 479946938 479950116 ECH
Vifa1g00406 1 64780227 64780902 Vifa2g01848 2 479946938 479950116 PCT