Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00406 ATGGGCCACTTATCCATCACCATCACCCTCACCTTCATCTCTTTCCTTTTCCTCTTTGTAACTCTCTTCCACCAACTCGCTCATGCCGACTCACCAACTCCCCCTCCTTACTCCTGCGACACCACCAACCCACTCACCAAATCCTACAGCTTCTGCAATCTCAACCTTCCCATCATTGAAAGAGCCAAAGACATCGTATCAAAACTCACATTGGATGAAAAACTCTCTCAACTCGTTAACACAGCTCCTTCTATCCCTCGGCTCGGTATTCCGAGTTACCAGTGGTGGAGCGAAGCGTTGCACGGCGTTGCTAATGCCGGTAAAGGGATAAGATTAAACGGAAATGTTAGTATTAAAGCCGCAACTAGTTTCCCTCAAGTTATTCTCACTGCTGCTTCTTTTGATCCAAAACTTTGGTACCAAATCAGTAAGGTGATTGGAACGGAAGCTAGAGGAGTATACAATGCCGGGGCAGGCAGAAGGGATGACATTTTGGGCACCAAACATAAATATATTTAG 519 0.4605 MGHLSITITLTFISFLFLFVTLFHQLAHADSPTPPPYSCDTTNPLTKSYSFCNLNLPIIERAKDIVSKLTLDEKLSQLVNTAPSIPRLGIPSYQWWSEALHGVANAGKGIRLNGNVSIKAATSFPQVILTAASFDPKLWYQISKVIGTEARGVYNAGAGRRDDILGTKHKYI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00406 172 Gene3D - 43 158 IPR036962 GO:0004553|GO:0005975
Vifa1g00406 172 SUPERFAMILY (Trans)glycosidases 49 153 IPR017853 -
Vifa1g00406 172 PANTHER SUGAR HYDROLASE-RELATED 23 158 IPR044993 GO:0009044|GO:0045493
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00406 Vifa-Chr1 64780227 64780902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00406 26 157 Glycoside Hydrolase AT1G78060 68.182 7.24e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00406 - - mtr:120580484 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00406 1 64780227 64780902 Vifa1g00406 1 64780227 64780902 ECH
Vifa1g00406 1 64780227 64780902 Vifa2g01848 2 479946938 479950116 PCT