Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01827 ATGGAAGATCAGAATTTGTTGGAGAAAAAGGAACCTAGTTCCGAAGCGGTTCAGAAGCTGCAAGCAGATACTTCTGCAATTCAGATCGGAGATCTGGATAAAGAGGCAGAAGCTCTGAATACTCGTCATGATAAACTGGAGGATATATCGGATGTGATAAAGAATGTCGACGATGGAAAGTCCAAGTCTGATACTGATGAAAAGGTAAATGACAAATTCATTGGAGATTCTGGTTTGTCTGGGACCAAATCTGAAGTGGGTGTCAACAATGATTCTGGTCATGATAAGGTGGAGAGGAACATGGATTCCGAGCCTAAAAGTGAAGAGACAAATCTAGATGAAAACTCGCGACCGAATGACTTGGCTGAAGAGGAGGATGACAGTGGAGACATTGAATCCGCCACACATGTGAATCAAAAGGCCGATGAGATTCCAAGCGAGGACAACATTTTGGACCCTGTGTTTGATGGAACTGAGGTTCCAGGGATGGAAGTCAATAGGAGCACATCTACCCGTAAGTTGGATGGAGATCAGGACAGTTCAGGTGTGGTTGAGAAGGCGGTAGCTCTTAAAAATTTTGTTAGGGAGAAAAGTGCAGTGGCTGTTTCCACTATGCTGCGCCGCCTTTCAGGAAAAAGTGATGATGCTTCTGTGGGTAATTTTGATGATGAAAGCAAGGATGGTTCAGATAACGAATCTAAATTGGTTTCTCAGAAGTCAGTGGAGAAATCTGCCTGGAATCCCTTGAATTATATTAAGAAGTCGTCTGATGTTGAGGTGGACTATACTGTACCACCAATAGCCATGAAAGGAAGGATTATTCTGTACACGAAACTGGGGTGCCAAGAATCTAGAATATTCAGGCTATTTTTACGTACGAAAAGGCTTAGGTTTGTGGAAATCAATATAGATGTATACCCTAGTAGAAAGATGGAGCTGGAAAAGATTTCAGGATCTACTTCAGTTCCTAAGGTGTTTTTCAATGAAATACTTATTGGAGGCTTGAGTGAGCTAAAAAACTTGGATGAGTCTGGAAGGCTTGATGAGAAGATTGACTATCTTGTTACTGAAGCACCATTATTTGAAACGCCATCACCACCTTTTTCTGGAGAGGATGATATCTCCAGCAGTGGGGCAGTTGATGAATTGGCTCTTATTGTACTCAAAATGAAAGAATCTATTACTGTGAAGGACAGATTGTACAAAATGCGCAGGTTTACCAACTGTTTTCAGGGATCGGATGCTTTAAATTTCTTATCAGAAGATCAATATTTGGAAAGACCAGAGGCCGTTGAATTTGCTCGGAAGCTTGCCAGCAAACTCTTTTTTCGACATGTTCTTGATGAGAATCTATTTGAAGATGGTAATCACGTGTATCGGTTTTTGGATGATGATCCAACTGTGGTGTCACAATGTCACAACATTCCTAGGGGCATTATTACCTTTAAACCGAAGCCTATAGCAGAAATTGCATCAAGGCTTAGAGTTCTGGCCTCTGCAATGTTTGAAGCCTATGCTTTTGAAGATGGGTCTCGTGTTGATTATACAAGTTTGCATGGAAGTGAGGAGTTCGCAAGGTATCTGAGAATAGTAGAAGAGCTCCAAAGAGTGGAAATATGGGATTTATCTAGAGAAGAGAAGCTTGCTTTCTTTATTAATCTCTATAATATGATGGCCATCCATGCAATCTTAGTATTGGGTCAACCAGATGGAGCACTAGAAAGAAGGAAAATATTTGGAGAGTTCAAATATGTTATAGGTGGCTCCACCTACTCACTTTCAGCTATTCAAAATGGCATATTGAGGGGAAACCAGCGGCCTCCATATAATCTTAAGAAGCCATTTGGTGCAAAAGACAAACGCTCAAAGGTGGCACTCCCTTACCCTGAGCCTCTGATTCATTTTGCTTTGGTATGTGGCACCCGATCTGGGCCTGCACTACGGTGCTATTCTCCTGGAAAAATTGATGAAGAGTTATTGGATGCAGCTCGCAACTTCCTGAGAAGTGTAGGTCTTCTAATTGATTTGACAGCAAAGACTGCATATGCTAGTAAGATCCTTAAATGGTATAGTATAGATTTTGGCAAGAGCGAGGTTGAGGTGATCAAGCATGTGTCAAACTATTTAGATCCAGCCGACTCAGAAGTATTATTGGACCTGCTTGCCTCTTCTGAGTTGAAGGTGACATATCAGCCTTACGACTGGGGTTTGAACTGCTAG 2220 0.4171 MEDQNLLEKKEPSSEAVQKLQADTSAIQIGDLDKEAEALNTRHDKLEDISDVIKNVDDGKSKSDTDEKVNDKFIGDSGLSGTKSEVGVNNDSGHDKVERNMDSEPKSEETNLDENSRPNDLAEEEDDSGDIESATHVNQKADEIPSEDNILDPVFDGTEVPGMEVNRSTSTRKLDGDQDSSGVVEKAVALKNFVREKSAVAVSTMLRRLSGKSDDASVGNFDDESKDGSDNESKLVSQKSVEKSAWNPLNYIKKSSDVEVDYTVPPIAMKGRIILYTKLGCQESRIFRLFLRTKRLRFVEINIDVYPSRKMELEKISGSTSVPKVFFNEILIGGLSELKNLDESGRLDEKIDYLVTEAPLFETPSPPFSGEDDISSSGAVDELALIVLKMKESITVKDRLYKMRRFTNCFQGSDALNFLSEDQYLERPEAVEFARKLASKLFFRHVLDENLFEDGNHVYRFLDDDPTVVSQCHNIPRGIITFKPKPIAEIASRLRVLASAMFEAYAFEDGSRVDYTSLHGSEEFARYLRIVEELQRVEIWDLSREEKLAFFINLYNMMAIHAILVLGQPDGALERRKIFGEFKYVIGGSTYSLSAIQNGILRGNQRPPYNLKKPFGAKDKRSKVALPYPEPLIHFALVCGTRSGPALRCYSPGKIDEELLDAARNFLRSVGLLIDLTAKTAYASKILKWYSIDFGKSEVEVIKHVSNYLDPADSEVLLDLLASSELKVTYQPYDWGLNC 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01827 739 Coils Coil 29 49 - -
Vifa2g01827 739 ProSiteProfiles Glutaredoxin domain profile. 261 358 - -
Vifa2g01827 739 MobiDBLite consensus disorder prediction 212 237 - -
Vifa2g01827 739 Gene3D Glutaredoxin 268 353 - -
Vifa2g01827 739 MobiDBLite consensus disorder prediction 54 181 - -
Vifa2g01827 739 Pfam Glutaredoxin 273 329 IPR002109 -
Vifa2g01827 739 MobiDBLite consensus disorder prediction 54 73 - -
Vifa2g01827 739 ProSiteProfiles DEP domain profile. 390 463 IPR000591 GO:0035556
Vifa2g01827 739 CDD DEP 382 460 - -
Vifa2g01827 739 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 53 739 - -
Vifa2g01827 739 SUPERFAMILY Thioredoxin-like 268 352 IPR036249 -
Vifa2g01827 739 Gene3D - 375 469 IPR036388 -
Vifa2g01827 739 MobiDBLite consensus disorder prediction 89 118 - -
Vifa2g01827 739 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 394 461 IPR000591 GO:0035556
Vifa2g01827 739 SUPERFAMILY "Winged helix" DNA-binding domain 382 467 IPR036390 -
Vifa2g01827 739 SMART DEP_3 390 463 IPR000591 GO:0035556
Vifa2g01827 739 MobiDBLite consensus disorder prediction 217 237 - -
Vifa2g01827 739 MobiDBLite consensus disorder prediction 131 147 - -
Vifa2g01827 739 Pfam Protein of unknown function, DUF547 541 667 IPR006869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01827 Vifa-Chr2 473648361 473651315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01827 - - tpra:123896937 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01827 2 473648361 473651315 Vifa2g01827 2 473648361 473651315 ECH
Vifa1g00357 1 57311073 57321113 Vifa2g01827 2 473648361 473651315 PCT