Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00357 ATGGAAGGAGATACATATGTTGTTCAGAGTGAAGATCACGAAGAACTGAAACAGGCAAAAAATCGAAGTATTTCTCATGATGGCCCCAAGTATGAGAATGAACAAGATGGTGTGTCTTCAGACACATCAAGTTCTCAAGATGTTGAAAATCAGGAAGGAGATAGTTTTGTTGTTCAGAATGAAGATCACGAAGAATCAAGACAGGTGAAAAGTCAAAATATTTCTCTTAATGACCCCAAGTATGAGAATGAGCAAGATGACATATCTTCAGACACGTCAAATTCTCGAGATGTTGAAAATTTGGAAGTAGATAATGTTGTTAAGAATGAAGATCACGAAGAATCAAAAGAGGTGATAAGTCAAAATATTTCTCACGAGGGCCCCAAGTATGAGAATGAGCAAGATGATGATATATCATCAGATACGTCAAGTTCTAAAGATTTTGAAAATTTGAAAGGAGATACTTGTGTTGTTAATAATGAAGATCACGAAAAATCAAAAGAGGTGATAAGTCAAAATGTTTCTCATGAGGGCCCTAAGCATGAGAATGAGCAAGATGATGATATATCATCAGACACGTCAAGTTCTAAAGATGTTGAAAACTTGAAAGGAGATACTTATGTCGTTAATAATGAAGATCACGAAGAATCAAAACAGGCGAAAAGTCAAAATATTTCTAATGATAGACCCAATAATGAGAATGAACAAGATGATGTATCATCAAATACGCCTTGTTCTCAAGATGCTGAAAATCTAGAAAGAGATACTTATGTTGTTCTGAATGAAGATCACGAAGAATCAAAACAGGCGAAAAGTCAAAATATTTCTAATGATAGTCCCAATAATGAGAATGAACAAGATGATGTATCATCAAATACGCCATGTTCTCAAGATGTTGAAAATCTAGAAAGAGATACTTATGTTGTTCAGGTGAAAAGTCAAAATATTTCTCATGTTGGCCCCAAGCATGAGAATGAACAAGATGGTGTATGTTCTCAAGATGTTGAAAAGCTTCAAGGCGATGCATTTACCTTTCAAAAAGAAGACTCCAACAAAGATTTAAAAGAGGAAAAAATTGAAAATATGGGTAATGATGCTCCAGGGTTTGAGGAAAAGCTAGATGATATATTGGATAGTATATACGGGACAATAGATGTCGATTATAATACTCCCAAGAGGGTGAAAGACAATGTGATTGAAGGACCAAACTTGGCTCATAGGGTAGATGGAAGTAGAACTATGGACTCACATTCACCAAAAATAAATCAAAAGATAGATAACACTTCAACTGAGGTCAATACTATGAATCATAAAGTTGATGCAGATCTAGGGACTCCTCACGTGGTTGAGAAGGCTGTAGCGCTTAAAAACTTTGTGAGGGAGAAAAGTTTAGTAGCGGTCTCCACTCTACTGCGTCGACTTTCTAGAAAAACTGATGACGGTTATGTGAATAATTCTGATAATAAAGTTAAAGATGTTTCAGATATATCAAGAGACAGTGAATCCAAAGAGGCTCCTGAGAAGACATCAGAGAAAATGAATTGGAGGGACGGACCAATAACTGAAGGCCCTCTGCAACCCATAGCCATGAAAGGAACAGTTATACTGTACACAAGACTAGCCTGCCGAGAATGTAAAGAGGTTAGAAAAATTTTGTATGCGAAAAGGCTTAGATATGTTGAAATCAACATTGACGTGTACCCTAGTAGAAAGATAGAGCTGGAGAAGTTTTCTGGATCTACTTCTGTTCCCAAGGTTTTTTTCAATGAAGTATGCATAGGAAGCTTGAGTGAGCTAAAGACCTTAAATGAGTCTGGCAAGCTTGATGAGAAGATTGACTTCCTTATAGCTGAATCACCTTTATTTGAAGGACCACTTCCCCCACTTTCTGGAGAGGACGATGTGTCCAGTAGTGGGGCAGTTGATGAAATGGCTCTGATCGTCCGCAAAATGAAAGTATCTATTGTTGTGAAGGATCGGTTTAGCAAATTGCGAAGGTTCACCAATTGCTTTATAGGCTCTGAAGCTGTAGACTTCTTATCAGAAGATCAATATTTGGAAAGGAAAGAGGCTATTGAATTTGGACGAAAGCTCGCTAGCAAGCTCTTCTTTCAGCACGTTCTTGATGATAATCTATTTGAGGATGGTAATTACTTATATCGGTTTTTGGATGACGATCCAATTGTGGCATCTCAATGTCATAATATTCCAAGAGGGATAACTACCACGAAACCTAAGCCTATCACAGAAATTGCATCAAGGCTGAGATTACTGTCCTATGCAATGTTTGAAGCCTATGCCTCTGAAGATGGACGTCACGTTGATTACAGAAGTATGCATGGAAGTGAGGAATTTGCAAGGTATCTAAGAATTGTAGAAGAGCTACAAAGAGTAGAAATGTCGGATTTGTCTAGAGAAGAGACGATTGCTTTCTTTCTTAATCTATATAATATGATGACCATCCATGCAATCTTAGTATGGGGCCATCCAGATGGAATCCTAGAAAGAAGGAGATTGTTTGGAGACTTCAAATATGTTATTGGTGGGTCCACCTACTCACTTTCAGCTATTCAGAATGGCATTTTGAGGGGGAACCAGCGACAGCCATATACCCTTATGAGGCCATTTGGTGCAAAAGATAAACGCTTAATGGTGGCCCTCTCTTTACCAGAGCCTCTCATTCATTTTGCTCTAGTATGTGGTACTCGATCTGGGCCTGCACTTCGATGCTATTCTCCTCGCGACATTGACTCAGAGTTAATGGACGCAGCTCATAATTTCCTTAGAAATGGTGGCGTTTTGATAGATTTTACTGCAAAGATTGCATATACCAGTAAAATTCTTAAATGGTTCAGCTTAGATTTTGGCAAAAATGAGGTAGAGGTTATGAAGCATGTGTCAATCTACTTAGATCCATCCGAGTCTGAACTATTGTTTGATTTACTTGCCACTTCTGAGTTGAAGGTGATATATCAGCCTTATGACTGGGGTTTGAATTGTTAG 3003 0.3796 MEGDTYVVQSEDHEELKQAKNRSISHDGPKYENEQDGVSSDTSSSQDVENQEGDSFVVQNEDHEESRQVKSQNISLNDPKYENEQDDISSDTSNSRDVENLEVDNVVKNEDHEESKEVISQNISHEGPKYENEQDDDISSDTSSSKDFENLKGDTCVVNNEDHEKSKEVISQNVSHEGPKHENEQDDDISSDTSSSKDVENLKGDTYVVNNEDHEESKQAKSQNISNDRPNNENEQDDVSSNTPCSQDAENLERDTYVVLNEDHEESKQAKSQNISNDSPNNENEQDDVSSNTPCSQDVENLERDTYVVQVKSQNISHVGPKHENEQDGVCSQDVEKLQGDAFTFQKEDSNKDLKEEKIENMGNDAPGFEEKLDDILDSIYGTIDVDYNTPKRVKDNVIEGPNLAHRVDGSRTMDSHSPKINQKIDNTSTEVNTMNHKVDADLGTPHVVEKAVALKNFVREKSLVAVSTLLRRLSRKTDDGYVNNSDNKVKDVSDISRDSESKEAPEKTSEKMNWRDGPITEGPLQPIAMKGTVILYTRLACRECKEVRKILYAKRLRYVEINIDVYPSRKIELEKFSGSTSVPKVFFNEVCIGSLSELKTLNESGKLDEKIDFLIAESPLFEGPLPPLSGEDDVSSSGAVDEMALIVRKMKVSIVVKDRFSKLRRFTNCFIGSEAVDFLSEDQYLERKEAIEFGRKLASKLFFQHVLDDNLFEDGNYLYRFLDDDPIVASQCHNIPRGITTTKPKPITEIASRLRLLSYAMFEAYASEDGRHVDYRSMHGSEEFARYLRIVEELQRVEMSDLSREETIAFFLNLYNMMTIHAILVWGHPDGILERRRLFGDFKYVIGGSTYSLSAIQNGILRGNQRQPYTLMRPFGAKDKRLMVALSLPEPLIHFALVCGTRSGPALRCYSPRDIDSELMDAAHNFLRNGGVLIDFTAKIAYTSKILKWFSLDFGKNEVEVMKHVSIYLDPSESELLFDLLATSELKVIYQPYDWGLNC 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00357 1000 ProSiteProfiles Glutaredoxin domain profile. 522 619 - -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 80 120 - -
Vifa1g00357 1000 ProSiteProfiles DEP domain profile. 651 724 IPR000591 GO:0035556
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 128 143 - -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 481 520 - -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 223 250 - -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 481 515 - -
Vifa1g00357 1000 CDD DEP 647 721 - -
Vifa1g00357 1000 Gene3D - 640 770 IPR036388 -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 35 55 - -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 207 222 - -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 156 194 - -
Vifa1g00357 1000 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 655 722 IPR000591 GO:0035556
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 272 300 - -
Vifa1g00357 1000 SMART DEP_3 651 724 IPR000591 GO:0035556
Vifa1g00357 1000 Pfam Protein of unknown function, DUF547 801 928 IPR006869 -
Vifa1g00357 1000 SUPERFAMILY Thioredoxin-like 528 613 IPR036249 -
Vifa1g00357 1000 Gene3D Glutaredoxin 529 614 - -
Vifa1g00357 1000 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 188 1000 - -
Vifa1g00357 1000 SUPERFAMILY "Winged helix" DNA-binding domain 645 732 IPR036390 -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 1 304 - -
Vifa1g00357 1000 MobiDBLite consensus disorder prediction 255 271 - -
Vifa1g00357 1000 Pfam Glutaredoxin 534 593 IPR002109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00357 Vifa-Chr1 57311073 57321113 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00357 - - tpra:123905231 1342.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00357 1 57311073 57321113 Vifa1g00357 1 57311073 57321113 ECH
Vifa1g00357 1 57311073 57321113 Vifa2g01827 2 473648361 473651315 PCT